Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq7169 297 2e-75 seq28879 122 1e-22 seq5179 109 6e-19 >seq7169 Length=15740 Score = 297 bits (328), Expect = 2e-75 Identities = 614/914 (67%), Gaps = 45/914 (5%) Strand=Plus/Plus Query 18672 TTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACATTC 18731 ||| |||||| |||||| ||||||||||||||| || ||||| |||| ||||||| ||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 18732 CATAAAATCAAATGGATT-------TTTTACAT-----------TATATAttt------- 18766 |||||| || ||||| || || || || |||||| | Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 18767 -------ttttGA-ATCCTAATTCTAATAGTAGTCTATCCGCTACAAATTTAATATATGT 18818 |||| | | || | ||| | || |||| ||| || | || | ||| ||| Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 18819 GTTCATCATATCACAATTCATTCCTATTAATTTAACAGGTAGTGCATCTGTAAGAAATTC 18878 | ||| | | |||||||||||||| | |||||||||| || || | | ||| | Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 18879 TTGTTCTATATTTACTGCCTCTGATATAATAGATACAACTCTATCT--TCATTAGGAGGG 18936 |||||||| || || ||| ||||| |||||| || || |||||||| Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAAT-----CAACTCAATGCGCTCTTTAGGAGGC 6356 Query 18937 TAT---AGAAGATGTTTAAACATCAAACATGCAAAATCACAATGTAGTCCCTCGTCTCTA 18993 | | | |||||||||| | ||| || || |||||||| | |||||| ||||| Sbjct 6357 TTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTG 6416 Query 18994 CTTATCAATTCATTAGAAAATGTTAAACCAGGCATCAGTCCTCttttttttAACCAGAAT 19053 ||||| | ||||||| |||| | || ||||| ||||||| || |||| ||| || Sbjct 6417 CTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAG 6476 Query 19054 ATAGAAGCAAATGATCCAGAAAAGAATATACCTTCTACTGCTGCAAAAGCAACTAGTCTT 19113 |||| ||||| ||||| || || | ||| || |||||||||||||| ||||| | | Sbjct 6477 ATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGT 6536 Query 19114 TCTCCATAACTAGCATCATTATTATGAATCCATTTCAGTGCCCAATCAGCCTTCTTTTTT 19173 ||| || | ||| | | || | ||||| | ||||||||| | ||||||||| Sbjct 6537 TCTGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCA 6596 Query 19174 ACACATGGCATTGTCTCTATAGAATTAAATAGATACATACGCTCATCTGTATCTTTAACA 19233 ||||| || | ||| | ||| || || | | ||| | | || ||| | Sbjct 6597 ACACAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATA 6656 Query 19234 TATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCCATCTGAAAT 19293 |||| || || ||||| ||||||||| || || ||||| || ||||| ||||| | Sbjct 6657 TATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATA 6716 Query 19294 CCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCGACCAAATTT 19353 || || ||||| | |||| | ||||| ||||| || ||| | ||| | || || Sbjct 6717 CCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAACGTTCTAGTAAGTTC 6776 Query 19354 TCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATAAAATGTTTT 19413 ||| ||| ||||||||||| || || || |||||||| || | | |||||||| | Sbjct 6777 TCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACGT 6836 Query 19414 TCATCTGAGGTTAATGTA-TTCCAATCATTAATATCTTTAGATAAATCTACTTCTTCAAC 19472 || || | || | | | | ||||||| | || || ||||||||||||||||| || Sbjct 6837 TC-TCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCAC 6895 Query 19473 TGTCCAAAAAGAAGCCTCTGCTTTTTTATACATGTTCCATATATCACGATATTGTATAGG 19532 ||||| || || || | ||||| ||||| | | ||| | ||| |||||||||| || Sbjct 6896 AGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTGG 6955 Query 19533 AAATATAACAAATC 19546 || | ||||||| Sbjct 6956 GAAAAGTACAAATC 6969 >seq28879 Length=6601 Score = 122 bits (134), Expect = 1e-22 Identities = 183/260 (70%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 48153 AACCCAGGACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTC 48212 || || |||||||||| |||| |||||||| ||| | || | | || || | | | Sbjct 3843 AAACCTGGACATTCATGAGGATCCATCAATGTCCATTTATCGTTAGCTTCAACACGACGC 3784 Query 48213 ATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTG 48272 || || || || |||||||| ||||| | || ||||| | || || | ||||||| | Sbjct 3783 ATGAAAATGTCAGGTATCCATAGAGCAAAGAACAAATCTCGAGCTCGAACTTCTTCAGCG 3724 Query 48273 CCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATAT 48332 || |||| | | ||| | ||| | | || ||| | |||||| ||||| ||||| Sbjct 3723 CCTGTATTTTTGCGCATTTCTACAAACTGAAATACATCGGGATGCCAAGGTTCCAAATAC 3664 Query 48333 ATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTA 48392 || || | | | ||||| ||||| || ||||||||||| | ||| | |||||||||||| Sbjct 3663 ATAGCAAATGCGCCTGGACGTTTGTTGCCTCCTTGATCAACATAGCGTGCAGTATTGTTA 3604 Query 48393 TAAACTCTTAACATTGGGAC 48412 | || | ||||| || || Sbjct 3603 AATACGCGCAACATCGGAAC 3584 Score = 107 bits (118), Expect = 2e-18 Identities = 179/256 (70%), Gaps = 2/256 (1%) Strand=Plus/Minus Query 48416 ACCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAAT 48475 |||||| ||| |||||| ||||| | |||||| | ||| | | || ||| | Sbjct 3482 ACCATTAGATTCACCATTCGTTCCAGCTATATAAGTACCAAGACTGCGAATGTTATGCAC 3423 Query 48476 TGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATA 48535 | |||||| ||||| || |||||||||| | |||||| ||| | |||||||| Sbjct 3422 GTTCAGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATA 3363 Query 48536 AATTCCTTCTATACTATCATCTATCATATTTAAT-AGAAAACAACTAGACATTTGCGGAT 48594 ||| || || ||||||||||| |||| | |||| || || ||||| || | ||| || | Sbjct 3362 AATCCCCTCGATACTATCATCCTTCAT-TGTAATCAGGAAGCAACTTGAAAGTTGTGGTT 3304 Query 48595 GACAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACA 48654 ||||| | ||| || | || ||||| ||||| |||||||||| ||||| | | Sbjct 3303 TTGGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTA 3244 Query 48655 ATTTATATGTTTCAAT 48670 || ||||| | ||| Sbjct 3243 GATTGTATGTCTAAAT 3228 >seq5179 Length=18205 Score = 109 bits (120), Expect = 6e-19 Identities = 276/413 (67%), Gaps = 9/413 (2%) Strand=Plus/Minus Query 47056 CATAGAAATGCATACTAGTTAATTTAGAATAACTAGGTTCTGAAATATGAATATTAAGAG 47115 |||| |||||||| ||||||| ||| |||| |||||| | || ||| | ||||||| Sbjct 938 CATAAAAATGCATGCTAGTTATTTTCCCATAATTAGGTTGAGCAAGATGCAAGTTAAGAG 879 Query 47116 ATTGACTCTGATCAATAAATGCACCTCTATCAGCTGCCATATCTAAAATAACCCTTTGTG 47175 ||||||| || ||||| || | | | |||||||||||||| | ||| | | || | Sbjct 878 ATTGACTTTGGTCAATGAAAGGTGCACGGTCAGCTGCCATATCAATAATTTTCTTCTGAG 819 Query 47176 GTATCTCCCATACTGTTTTATAAATTTGTTTAATGTCTTCTGGGA---GATTAGTATTTT 47232 || ||||| || || ||||| | | || | ||||| |||| || ||| | Sbjct 818 AGATTTCCCAAACAGTCTTATACAAAGGCTTCAACTCTTCAGGGATTCCATCGATATGCT 759 Query 47233 GAATAGATCCTCCgttttctataattttg-ttttttaattc-atttgaccaaagttttcg 47290 |||| || ||| ||| ||| | | | ||||| | || |||||| | | | Sbjct 758 GAATTGAACCT--TGATTCAGCAATATAGCTGATTTAAGACTATCTGACCACAAATCTAA 701 Query 47291 ttcagttaatgtttttaa-AAGATGAGGATTAACAATTTGAAATTCTCCAGATAGTACTC 47349 | | ||| | | || ||||| ||||| ||||| || ||||| || || || | Sbjct 700 CTTTG-TAAGATCCTCAAGAAGATATGGATTCACAATCTGGAATTCACCGCTTAAAACAC 642 Query 47350 TACGGCTATATATATTACTTGTATATGGTTCTATAGATTCATTATTTCCAAAAATTTGAG 47409 ||| | | | || ||||| ||||||| | |||||||| ||||||| || |||| Sbjct 641 GACGAGAAAAGACGTTGCTTGTGAATGGTTCAGTGGATTCATTGTTTCCAAGGATCTGAG 582 Query 47410 CAGTTGATGCTGTAGGCATGGATGCAACTAATAAGCTATTTCTTACTCCATAT 47462 |||||||| || ||||| | |||| | | ||||| | || ||||||| Sbjct 581 AGGTTGATGCAGTCGGCATAGGCGCAAGGAGAAGACTATTCCGTAATCCATAT 529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 560785251593160