Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq14914 167 2e-35 seq27942 118 9e-21 seq52544 104 2e-16 seq25209 93.3 3e-13 seq61046 89.7 4e-12 >seq14914 Length=10545 Score = 167 bits (184), Expect = 2e-35 Identities = 349/518 (67%), Gaps = 9/518 (2%) Strand=Plus/Minus Query 550026 GTGTTGGTGTTTGGCAAAATGGTAAAGTTGAAATTATTGCCAATGATCAAGGTAACAGAA 550085 ||||||| || | || ||| | ||| ||||| || ||||| ||||| || || || | Sbjct 7239 GTGTTGGGGTATTTCAGGGTGGAAGAGTGGAAATAATCGCCAACGATCAGGGAAATAGGA 7180 Query 550086 CTACTCCATCTTATGTTTCTTTCAC---GGAAACTGAACATTTAGTTGGTGATGCAGCAA 550142 ||| || |||||||| | ||||| |||| ||||| | |||| ||||| || | Sbjct 7179 TTACGCCTTCTTATGTGGCATTCACTACGGAAGGTGAACGGCTTATTGGAGATGCTGCCA 7120 Query 550143 AATATCAAGCCACTGGTAATCCTACCAATACTATTTTTGATGCTAAACGTTTAATTGGAA 550202 || | ||| || || ||| || || ||||||||| || | | ||||||| Sbjct 7119 AACACCAACTTACCTCCAACCCTGAAAACACAGTTTTTGATGTCAAGAGACTCATTGGAA 7060 Query 550203 GAAGTTTTAATGATTCGACTGTTCAGGCAGATATGAAGCATTGGCCTTTCCAAATTGTTA 550262 ||| |||| |||| | | || || | ||||| ||||| | |||||| || |||| | Sbjct 7059 GAACTTTTGATGAGCAGTCAGTACAAGACGATATTAAGCACTACCCTTTCAAAGTTGTCA 7000 Query 550263 ATGTTTCTGGAAAACCTTATATTGAAGCTACTCATGAAGGATCTGTTAAACAAT---TTT 550319 | ||||| ||| |||||| | | | || ||| || | | | || Sbjct 6999 ACAAAAAGAACAAACCCTATGTTGAAGTGA---AAGTTGGTGCTGATACAAAGTCGTTTG 6943 Query 550320 CACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACAGCCAGTGCTTTTG 550379 | |||||| | || || ||||||| ||| || |||||| ||| || || | | Sbjct 6942 CTCCAGAAGAGATATCTGCTATGGTCTTAGGAAAGATGAAAGAAAGTGCTGAAGCATATT 6883 Query 550380 TTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTAATGACTCACAAC 550439 | ||| || | || || |||| ||| | ||||| ||||| || || | ||| | |||| Sbjct 6882 TGGGTAAAAAGGTGACACATGCCGTAGTTACTGTGCCAGCCTACTTCAGTGATGCTCAAC 6823 Query 550440 GTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTCGTATTATCAATG 550499 |||| || || ||||||||||| ||||| || | ||||| ||||||||||| || | Sbjct 6822 GTCAGGCAACAAAAGATGCTGGTACCATTGCAGGGTTGAATGTACTTCGTATTATTAACG 6763 Query 550500 AACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 |||| ||||| ||||| |||| || || || || ||| Sbjct 6762 AACCAACTGCAGCTGCGATTGCCTACGGTCTGGACAAA 6725 Score = 143 bits (158), Expect = 2e-28 Identities = 200/278 (72%), Gaps = 2/278 (1%) Strand=Plus/Minus Query 552303 GATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATGACTAATCTTATC 552362 |||||| ||| | | || ||| | ||||||||||| ||| | ||||| || || ||| Sbjct 6112 GATGTTTGTCCCTTGACACTGGGTATTGAAACAGTTGGTGGTGTAATGACAAAACTCATC 6053 Query 552363 GATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACGTATTCAGATAAT 552422 |||||||| |||||| || || || | |||||||||| | | ||||| Sbjct 6052 CCAAGAAATACAGTTATTCCAACAAAGAAGTCGCAAATATTTTCTACAGCTGCCGATAAC 5993 Query 552423 CAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACTAAAGAT-AATAA 552481 ||| || |||| || |||||| | || || || ||| || | | || |||| | || | Sbjct 5992 CAACCTACTGTAACCATTCAAGTATTCGAGGGTGAACGAGCAATGAC-AAAGTTCAACCA 5934 Query 552482 TCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAAT 552541 | |||||||| ||| |||| ||||||||||| || || ||||| || || ||||| Sbjct 5933 TTTACTTGGTAAATTTGATTTGACTGGTATTCCTCCAGCACCACGTGGTGTTCCACAAAT 5874 Query 552542 TGAAGTTACTTTCGATATCGATGCCAATGGAATTTTGA 552579 ||||||||| ||||| ||||||| || ||||| |||| Sbjct 5873 TGAAGTTACCTTCGAAATCGATGTAAACGGAATATTGA 5836 >seq27942 Length=6783 Score = 118 bits (130), Expect = 9e-21 Identities = 157/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 563257 AGACGGAGTACAAGATGAAGGGTACTTTCTTTGGTAATATTGTAATCAGCTAGAGTTCTT 563316 ||||| || |||||||| | || ||||| |||||||||||| | || |||| | Sbjct 3802 AGACGAAGAACAAGATGTAATGTCGACTCTTTCTGAATATTGTAATCCGACAGTGTTCGT 3743 Query 563317 GAATCTTCAAGTTGTTTTCCGGCAAAAATAAGTCTTTGCTGATCAGGAGGAATTCCTTCT 563376 ||||||||| ||||| ||||| |||||||| | || ||||| || || || ||||| Sbjct 3742 CCATCTTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCC 3683 Query 563377 TTATCTTGAATTTTTTGTTTTACTGCCTCAATTGTATCAGTGTGAGTACATTCGAGAGTA 563436 || |||||||| || || |||||||| || || |||| | | ||| || || Sbjct 3682 TTGTCTTGAATCTTAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTT 3623 Query 563437 ACAGTTTTACCAGTAAGAGTTTTAACGAAAATTTGCAT 563474 | ||||| || || || ||||| || ||||| ||||| Sbjct 3622 ATGGTTTTCCCCGTTAGTGTTTTCACAAAAATCTGCAT 3585 >seq52544 Length=3719 Score = 104 bits (114), Expect = 2e-16 Identities = 122/165 (74%), Gaps = 0/165 (0%) Strand=Plus/Plus Query 429289 ACGTACATTCAATGGTTTTCCCTTAAGTGGAAATACGCCATAATAATCTCGACCAATAAC 429348 ||| ||||||||| |||| || |||||||| |||||||||| ||||| ||||| ||| Sbjct 106 ACGCACATTCAATAGTTTACCTCGTAGTGGAAAGACGCCATAATTATCTCTACCAACAAC 165 Query 429349 ATTTAGTCCAGACATTGCAAAAGTTTTAGCTGAATCTCCTTCCGTCAAAATAAGTGTACA 429408 || |||| | || || ||||||||||| || ||||| || || ||||| ||||| Sbjct 166 TCCAAGACCAGCTACAGCCAACGTTTTAGCTGAGTCACCTTCAGTTAAGATAAGCGTACA 225 Query 429409 TTTATATCCTTCTTTGGTACCAGCTTTGTGAGCATTATATAATTT 429453 || || | ||| ||||| || || | ||||| || ||||| Sbjct 226 TTGGGATGAGTTTTTAGTACCCGCGTTATTAGCATCATCCAATTT 270 >seq25209 Length=7363 Score = 93.3 bits (102), Expect = 3e-13 Identities = 159/225 (71%), Gaps = 7/225 (3%) Strand=Plus/Plus Query 393937 AAAATTAGCTCCTGGATATACACGACGTCCATTTTTTACTAA-TTGTGTTAAATATTCAA 393995 ||| ||||| || ||||| | || |||||| | ||| | || ||| | || || | Sbjct 4296 AAACTTAGCACCAGGATAAA---GAGTTCCATTCTGTACCAGCTTCTGT-AGATGATCTA 4351 Query 393996 TGTTATGTTTTGTCACAATTTCATCAAATGTTAAATTCATTGCAATAATTTGTGGTAGTC 394055 ||||| || ||| || |||||| | | |||| ||| || ||| || ||| | | Sbjct 4352 TGTTAAATTGTGTAACCATTTCAGGATAAGTTAGATTTTGAGCTATAGTTCTTGGAACAC 4411 Query 394056 CCACTTCAT-TAAGAGCAATATTTGGATCCGAGGTAATAACTGTACGACCTGACATATCC 394114 | |||| || |||| || ||||||||| | ||||| || |||||| | || | || Sbjct 4412 CAACTTGATCTAAGTT-AAGATTTGGATCAGCTGTAATGACAGTACGAGCAGAGAAGTCA 4470 Query 394115 ACACGTTTTCCCATAAGATTTCCACGAATTCTACCTTCTTTACCT 394159 |||||||| ||||||||||| |||||||| | ||| |||| ||| Sbjct 4471 ACACGTTTACCCATAAGATTGCCACGAATACGACCAGCTTTGCCT 4515 >seq61046 Length=3119 Score = 89.7 bits (98), Expect = 4e-12 Identities = 75/92 (82%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 552507 GGTATTCCTCCTGCTCCTCGTGGAGTACCGCAAATTGAAGTTACTTTCGATATCGATGCC 552566 |||||||||||||| |||||||| || || || |||||||| || || || || ||||| Sbjct 2117 GGTATTCCTCCTGCGCCTCGTGGTGTTCCTCAGATTGAAGTCACGTTTGACATTGATGCT 2058 Query 552567 AATGGAATTTTGAATGTGACTGCTTGTGATAA 552598 ||||| ||| | ||||| |||||| |||| || Sbjct 2057 AATGGGATTGTCAATGTAACTGCTCGTGACAA 2026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4019334197735810