Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_016924.1 Length=185139 Score E Sequences producing significant alignments: (Bits) Value seq7169 248 1e-60 >seq7169 Length=15740 Score = 248 bits (274), Expect = 1e-60 Identities = 611/917 (67%), Gaps = 51/917 (6%) Strand=Plus/Plus Query 36887 TTGATATTCTCCAACTCGTCTTTCGAAAAAATTTGTCTTTCCTTCTAGTGATATATTTTC 36946 ||| ||||| ||||||||| |||| || ||||||||||||||||||| |||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 36947 CATAAAATCAAATGGATT-----------------AGATGTA-TTATATATAGTACTACA 36988 |||||| || ||||| || ||||||| ||||||| ||||| ||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATA-AGTACGACA 6180 Query 36989 -----------TGATAA-----TTCCTTCAGAAGCCTATCCGCAACAAATTCTATGTATT 37032 | |||| ||| | || | ||| || | || || ||||||| Sbjct 6181 GACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATT 6240 Query 37033 TACACATTAGTTCATAGTTTATACCAATTAGTTTTACTGGAATTGCATCTTGAAGAAATA 37092 ||||||| || | || || || || || | || || | || || | ||| Sbjct 6241 GGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACT 6300 Query 37093 GTTTTTCTATTATTACAGCATCTTTAACTATATTAAC--AATAACTTCTTCAGTTGGGGG 37150 | | |||||| | ||||| ||||| | || || ||| ||| |||| || | || Sbjct 6301 GCTGTTCTATCACGACAGCTTCTTTCA-TA-ATCAACTCAATGCGCTCTTTAG--GAGGC 6356 Query 37151 ATATTT--TAAATATTTAAACAATAAACATGCAAAATCACAATGTAAACCTTCATCTCTA 37208 | || || | |||||||| | ||| || || |||||||| || || |||||||| Sbjct 6357 TTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTG 6416 Query 37209 CTTATCAATTCATTAGAAAAGGTTAATCCTGGCATTAAACCTCtttttttAATCCAAAAT 37268 ||||| | ||||||| || | | || ||||| | |||| || || | |||||| Sbjct 6417 CTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAG 6476 Query 37269 ATTGCTGCAAAAGATCCAGAAAAGAAAATACCTTCAACTGCTGCAAATGCTACAAGACGT 37328 || || |||||| ||||| || || | ||| || ||||||||||| || || |||||| Sbjct 6477 ATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGT 6536 Query 37329 GTACCGAAAGTTGAACTATAATCAGAAATCCAtttttttGTCCAATCTGCCTTTAATTTA 37388 | || || || || ||||| ||||| | || ||| | ||||| | Sbjct 6537 TCTGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCA 6596 Query 37389 ACACATTCAATTGTTTC-AATTGCTTTTAAGAGAAAGtttttttCTTCACTATCTGTTAT 37447 ||||| || | ||| | ||||| || || || || | | | |||| || | || Sbjct 6597 ACACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAAT 6655 Query 37448 ATAAGTATCAATTAGTAAACTATACATTTCAGAGTGAATATTTTCAATAGCTATCTGAAA 37507 ||| || || |||| ||| |||||||| ||||| ||||| |||||||||||||| | Sbjct 6656 ATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCAT 6715 Query 37508 ACCATAAAAACACCTAGCTTCAGATAATTGAACATCGTTA-AAAAACCTCTTAGCTAAGT 37566 |||||| ||||| | |||| | | || || || | | ||||| | ||| ||||| Sbjct 6716 ACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAACGTTCTAG-TAAGT 6774 Query 37567 TTTCATTAACTATCCCATCACTAGCTGCAAAGAAAGCAAGAACATATTTTATAAAATGTC 37626 | ||| ||| || |||||||| || || ||||| || | || ||| ||||||||| | Sbjct 6775 TCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGAC 6834 Query 37627 TTTCATC--ATTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATC 37684 ||| | |||| | | ||||||| | || || |||||||| ||||| || Sbjct 6835 GTTCTCCCACTTTG--AGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTC 6892 Query 37685 AACGGTCCAAAAACTTGCCAATGCACGTTTATACATCGTCCAAATATCATTATGTTGTAT 37744 || ||||| || ||| | || ||||| | | ||||| ||| | || |||||| Sbjct 6893 CACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTAT 6952 Query 37745 TGGAAATATTACAAATC 37761 ||| || | |||||||| Sbjct 6953 TGGGAAAAGTACAAATC 6969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 590922123458760