Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq14914 188 5e-42 seq27942 134 9e-26 seq25209 122 6e-22 seq61046 95.1 8e-14 >seq14914 Length=10545 Score = 188 bits (208), Expect = 5e-42 Identities = 341/498 (68%), Gaps = 3/498 (1%) Strand=Plus/Minus Query 474382 TGGTAAAGTAGAAATAATTGCCAATGACCAAGGTAATAGAACAACACCATCATATGTTTC 474441 ||| | ||| |||||||| ||||| || || || ||||| | || || || ||||| | Sbjct 7220 TGGAAGAGTGGAAATAATCGCCAACGATCAGGGAAATAGGATTACGCCTTCTTATGTGGC 7161 Query 474442 TTTTACT---GAAACTGAACATCTTATTGGAGATGCTGCTAAATATCAAGCTGCATCTAA 474498 || ||| ||| ||||| ||||||||||||||||| ||| | ||| | | || || Sbjct 7160 ATTCACTACGGAAGGTGAACGGCTTATTGGAGATGCTGCCAAACACCAACTTACCTCCAA 7101 Query 474499 TCCTGTTAATACTATTTTTGATGCTAAAAGATTGATTGGTCGTAATTTTGATGATACCAC 474558 |||| || || ||||||||| || ||| | ||||| | | ||||||||| | Sbjct 7100 CCCTGAAAACACAGTTTTTGATGTCAAGAGACTCATTGGAAGAACTTTTGATGAGCAGTC 7041 Query 474559 TGTCCAATCTGATATGCGTCATTGGCCTTTTAAGGTGATAAATGTTGGTGGTAAACCATA 474618 || ||| ||||| || | ||||| || || | || ||||| || Sbjct 7040 AGTACAAGACGATATTAAGCACTACCCTTTCAAAGTTGTCAACAAAAAGAACAAACCCTA 6981 Query 474619 TATAGAAGCAATACACGCAGGTGAAACTAAACAATTTTCACCGGAACAAATTTCTTCAAT 474678 | | |||| | | | | ||| || || ||| | || ||| | || ||| | || Sbjct 6980 TGTTGAAGTGAAAGTTGGTGCTGATACAAAGTCGTTTGCTCCAGAAGAGATATCTGCTAT 6921 Query 474679 GGTTTTAGCCAAAATGAAACAAACCGCGAGCTCATATCTTGGACAAGAAGTAACTGATGC 474738 ||| |||| || |||||| ||| || ||||| | || || | || || |||| Sbjct 6920 GGTCTTAGGAAAGATGAAAGAAAGTGCTGAAGCATATTTGGGTAAAAAGGTGACACATGC 6861 Query 474739 AGTAATTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGG 474798 ||| ||||||| ||||| || || | |||| |||||||||| ||||| |||||||| || Sbjct 6860 CGTAGTTACTGTGCCAGCCTACTTCAGTGATGCTCAACGTCAGGCAACAAAAGATGCTGG 6801 Query 474799 AAGAATTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGC 474858 | |||||||| | ||||| | ||||||||||| |||||||| ||||| || |||| Sbjct 6800 TACCATTGCAGGGTTGAATGTACTTCGTATTATTAACGAACCAACTGCAGCTGCGATTGC 6741 Query 474859 TTATGGTCTTGATAAGAA 474876 || ||||| || || || Sbjct 6740 CTACGGTCTGGACAAAAA 6723 Score = 118 bits (130), Expect = 7e-21 Identities = 181/253 (72%), Gaps = 4/253 (2%) Strand=Plus/Minus Query 475907 GGTCTTGAAACAGTTGGAGGGATTATGACTAATCTTATTGACAGAAATACTCCTATCCCA 475966 ||| ||||||||||||| || | ||||| || || || |||||||| ||| ||| Sbjct 6091 GGTATTGAAACAGTTGGTGGTGTAATGACAAAACTCATCCCAAGAAATACAGTTATTCCA 6032 Query 475967 TGCAAAAAATCAAAAGTATTTTCCACTTATTCTGATAATCAAACAACTGTAACCATCCAA 476026 || || || || ||||||| || | | ||||| ||| | ||||||||||| ||| Sbjct 6031 ACAAAGAAGTCGCAAATATTTTCTACAGCTGCCGATAACCAACCTACTGTAACCATTCAA 5972 Query 476027 ATCTTTGAAGGTGAAAGAAAATTCACTAAAGAT-AATAACAAACTTGGAACTTTTAATCT 476085 | || || |||||| || | | || |||| | || | |||||| | ||| || | Sbjct 5971 GTATTCGAGGGTGAACGAGCAATGAC-AAAGTTCAACCATTTACTTGGTAAATTTGAT-T 5914 Query 476086 TGA-AGGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTG 476144 ||| ||||||||||| || || | || ||||| |||||||||||||| || || || | Sbjct 5913 TGACTGGTATTCCTCCAGCACCACGTGGTGTTCCACAAATTGAAGTTACCTTCGAAATCG 5854 Query 476145 ATGCAAATGGTAT 476157 ||| ||| || || Sbjct 5853 ATGTAAACGGAAT 5841 >seq27942 Length=6783 Score = 134 bits (148), Expect = 9e-26 Identities = 161/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||||||||| || |||||||| | ||| ||||| || ||| ||||| | || || Sbjct 3806 ACGAAGACGAAGAACAAGATGTAATGTCGACTCTTTCTGAATATTGTAATCCGACAGTGT 3747 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || ||||||||| || || || || ||||||||||| |||||||| || || || || Sbjct 3746 TCGTCCATCTTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCC 3687 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||||||||||||| || || || || || || |||| || | |||||| Sbjct 3686 TTCCTTGTCTTGAATCTTAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAG 3627 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || ||||| || || || || || || ||||| || Sbjct 3626 GGTTATGGTTTTCCCCGTTAGTGTTTTCACAAAAATCTG 3588 >seq25209 Length=7363 Score = 122 bits (134), Expect = 6e-22 Identities = 165/224 (74%), Gaps = 7/224 (3%) Strand=Plus/Plus Query 321689 AAAATTAGCTCCGGGATATACACGACGCCCATTTTTTACTAA-TTGTGTGAGATATTCAA 321747 ||| ||||| || ||||| | || ||||| | ||| | || ||| |||| || | Sbjct 4296 AAACTTAGCACCAGGATAAA---GAGTTCCATTCTGTACCAGCTTCTGT-AGATGATCTA 4351 Query 321748 TATTATGTTCCGTAACAATTTCATCAAATGTAAGATTTTTTGCAATAATTAATGGTAAAC 321807 | ||| || ||||| |||||| | | || ||||||| || ||| || ||| | || Sbjct 4352 TGTTAAATTGTGTAACCATTTCAGGATAAGTTAGATTTTGAGCTATAGTTCTTGGAACAC 4411 Query 321808 CAACTTCAT-TCAGTGCAATATTTGGATCAGATGTGATAACTGTACGACCAGACATATCA 321866 |||||| || | ||| || ||||||||||| ||| || || |||||| |||| | ||| Sbjct 4412 CAACTTGATCTAAGTT-AAGATTTGGATCAGCTGTAATGACAGTACGAGCAGAGAAGTCA 4470 Query 321867 ACACGTTTACCCATAAGATTTCCTCTAATACGACCTTCTTTTCC 321910 |||||||||||||||||||| || | ||||||||| |||| || Sbjct 4471 ACACGTTTACCCATAAGATTGCCACGAATACGACCAGCTTTGCC 4514 >seq61046 Length=3119 Score = 95.1 bits (104), Expect = 8e-14 Identities = 76/92 (83%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 476090 GGTATTCCTCCTGCTCCCAGAGGAGTTCCTCAAATTGAAGTTACTTTTGATATTGATGCA 476149 |||||||||||||| || | || |||||||| |||||||| || ||||| |||||||| Sbjct 2117 GGTATTCCTCCTGCGCCTCGTGGTGTTCCTCAGATTGAAGTCACGTTTGACATTGATGCT 2058 Query 476150 AATGGTATTCTTAATGTTACTGCTTGTGATAA 476181 ||||| ||| | ||||| |||||| |||| || Sbjct 2057 AATGGGATTGTCAATGTAACTGCTCGTGACAA 2026 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3260099139623612