Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_020864.1 Length=205622 Score E Sequences producing significant alignments: (Bits) Value seq14914 316 3e-81 seq27942 187 3e-42 seq34618 138 1e-27 seq61046 84.2 3e-11 seq52544 84.2 3e-11 >seq14914 Length=10545 Score = 316 bits (350), Expect = 3e-81 Identities = 938/1427 (66%), Gaps = 47/1427 (3%) Strand=Plus/Minus Query 195333 GTGTTGGTGTATGGCAAAATGATCGTGTAGAGATTATCCCGAATGACCAAGGAAACCGTA 195392 ||||||| |||| || || | || || || ||| | || || || ||||| | | Sbjct 7239 GTGTTGGGGTATTTCAGGGTGGAAGAGTGGAAATAATCGCCAACGATCAGGGAAATAGGA 7180 Query 195393 CAACTCCATCGTACGTTGCCTT---TACAGATAATGAACGTCTCGTTGGAGATGCCGCAA 195449 || || || || || || || ||| || |||||| || |||||||||| || | Sbjct 7179 TTACGCCTTCTTATGTGGCATTCACTACGGAAGGTGAACGGCTTATTGGAGATGCTGCCA 7120 Query 195450 AAAATCAGAC--AGCTATGAACCCTATCAATACTGTCTTTGACGCGAAGCGTCTTATTGG 195507 || | || || | || |||||| || || || ||||| | ||| | || ||||| Sbjct 7119 AACACCA-ACTTACCTCC-AACCCTGAAAACACAGTTTTTGATGTCAAGAGACTCATTGG 7062 Query 195508 TCGCAAGTTTTCGGATAAGAA---AGTCCAAGACGATATAAAGGACTGGTCTTATGAAGT 195564 | || |||| ||| || | ||| ||||||||||| ||| ||| ||| |||| Sbjct 7061 AAG-AACTTTT--GATGAGCAGTCAGTACAAGACGATATTAAGCACTACCCTTTCAAAGT 7005 Query 195565 TGTTCCCGGTGTGGCTGATAAGCCTATGATTAATGTTGAATTTCACGGTGAGAAGAAACA 195624 ||| | | | | |||||| | || || || || | ||| | || Sbjct 7004 TGTCAACAAAAAGAACAA--ACCCTATGTTGAA-GTGAAAGTTGGTGCTGATACAAAGTC 6948 Query 195625 ATTTGCTCCCGAAGAAATTTCGTCTATGGTGTTGATTAAGATGAAGGAGACTGCGGAATC 195684 |||||||| ||||| || || ||||||| || |||||||| || | ||| ||| | Sbjct 6947 GTTTGCTCCAGAAGAGATATCTGCTATGGTCTTAGGAAAGATGAAAGAAAGTGCTGAAGC 6888 Query 195685 TTTCATGGGTAAAACTGTGAAAGATGCAGTTGTGACTGTACCTGCTTACTTCAGTGATTC 195744 | ||||||||| |||| | |||| || || ||||| || || |||||||||||| | Sbjct 6887 ATATTTGGGTAAAAAGGTGACACATGCCGTAGTTACTGTGCCAGCCTACTTCAGTGATGC 6828 Query 195745 ACAACGACAGGCGACAAAGGACGCTGCTGCTATTGCGGGTCTAAACTGT-CTTAGAATTA 195803 ||||| ||||| ||||| || |||| | | ||||| || | || ||| ||| | |||| Sbjct 6827 TCAACGTCAGGCAACAAAAGATGCTGGTACCATTGCAGGGTTGAA-TGTACTTCGTATTA 6769 Query 195804 TCAATGAACCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATA 195863 | || |||||||| || ||||| ||||| || ||||||||| || || || | || | Sbjct 6768 TTAACGAACCAACTGCAGCTGCGATTGCCTACGGTCTGGAC---AAAAAAGAAGGTGAGA 6712 Query 195864 AAAATGTATTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTCACTTCTCAATATTG 195923 | ||| | | | |||||||| || ||||||||||| ||||| || | |||| ||||| Sbjct 6711 AGAATATCCTCGTTTTTGATCTTGGGGGTGGTACGTTCGATGTTTCTTTGCTCACTATTG 6652 Query 195924 AAGGTGGTATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATT 195983 | ||| | || ||||| || || ||||||||| ||||| ||||| ||||||| Sbjct 6651 AGAATGGAGTGTTTGAAGTGGTTGCCACGAATGGTGATACACATCTGGGTGGGGAAGATT 6592 Query 195984 TCGATGCACGTCTTCTCCGTCATTTGTCTGATGAGTTCCGTCGAAAGAATAA---GAAAG 196040 | || |||| || | |||||| | |||| || ||||| || |||| Sbjct 6591 TTGACCAACGTGTTATTGATCATTT---CGCAAAGTTGATTCTTAAGAAGAAAGGTAAAG 6535 Query 196041 ATATT---TCTGGAAATCCTAGGGCTCTTCGTCGGCTTAGGACTGCATGTGAACGTGCCA 196097 ||||| | | || | | ||| | | | | || || ||| || | Sbjct 6534 ATATTAAAACAGACAAAC---GTGCTGTACAGAAGTTGAGACGTGAGGTTGAGAAGGCGA 6478 Query 196098 AACGAACTCTCTCTTCTACGGCTCAAACAATG---GTTGAGATTGATTCGTTGTTTGACG 196154 | | || || || ||||| || ||||||||||| || || |||| | Sbjct 6477 AGAGGAC---CTTGAGCACAATGCAAACTGTGCGAGTTGAGATTGAATCTCTGATTGATG 6421 Query 196155 GAATTGACTTCTATACAACTATTACCCGTGCACGT-TTTGAAGAGTTAAACTCTGATTTG 196213 | || || | | |||| |||| || || ||| |||||| ||||||| ||||| Sbjct 6420 GTGAGGATTTTTCTGAAACTCTTACACGAGC-CGTATTTGAAAAGTTAAATATGGATTTA 6362 Query 196214 TTTAGGAAGTGTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCT 196273 || | || | | |||| |||||| | | || || || || | ||| | || Sbjct 6361 TTCACGAGGACTTTGGAGCCTGTTAAGAAGGTCCTGGAAGATGCCAGTATGAAGAAAGAA 6302 Query 196274 AAGGTTGATGAAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATG 196333 || |||| || |||||| | || || ||||| || || || ||||| | ||||| | Sbjct 6301 GAGATTGACGAGATTGTCTTAGTTGGTGGATCCACTCGAATCCCGAAAGTCCAACAACTA 6242 Query 196334 CTTTCTAGCTTCTTCAATAATAAAGATTTAAACAAAACGATCAACCCGGATGAAGCAGTT 196393 || ||||| | ||||| ||||| | | || || || |||||||| Sbjct 6241 CTGCAGGATTTCTTTGACGGCAAAGAACCAAACAGAGGAGTTAATCCTGACGAAGCAGTC 6182 Query 196394 GCTTATGGTGCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACGTCCAA 196453 ||||||||||| || || |||| || | || | ||||| || |||| | | Sbjct 6181 GCTTATGGTGCAGCTGTACAGGGTGGTGTTATAGGTGGTGTAGAAAATACT------GGA 6128 Query 196454 GATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTT 196513 | | || || | || |||||| ||| | | |||||| ||||||||| |||||||| Sbjct 6127 GGTGTTGTGTTGCTGGATGTTTGTCCCTTGACACTGGGTATTGAAACAGTTGGTGGTGTA 6068 Query 196514 ATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCA 196573 ||||| ||| | || || || ||| |||||| || |||||| ||| | ||||| Sbjct 6067 ATGACAAAACTCATCCCAAGAAATACAGTTATTCCAACAAAGAAGTCGCAAATATTTTCT 6008 Query 196574 ACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGT 196633 || | ||||||| ||||| ||| |||||||||| || || ||||| | Sbjct 6007 ACAGCTGCCGATAACCAACCTACTGTAACCATTCAAGTATTCGAGGGTGAACGAGCAATG 5948 Query 196634 GCAAAGGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGA 196693 ||||| |||||| ||||||| | || |||||||| || ||||| | ||||| | Sbjct 5947 ACAAAGTTCAACCATTTACTTGGTAAATTTGATTTGACTGGTATTCCTCCAGCACCACGT 5888 Query 196694 GGTGTTCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAAT 196740 ||||||||||| ||| | ||| |||||| || || | ||| ||||| Sbjct 5887 GGTGTTCCACAAATTGAAGTTACCTTCGAAATCGATGTAAACGGAAT 5841 >seq27942 Length=6783 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 171862 ATGCAAATCTTTGTGAAAACCCTTACTGGAAAAACTATCACCCTCGAGGTTGAGTCGTCA 171921 ||||| || ||||||||||| || || || ||||| || ||||| || ||||| | | Sbjct 3585 ATGCAGATTTTTGTGAAAACACTAACGGGGAAAACCATAACCCTTGAAGTTGAACCTGCT 3644 Query 171922 GACACAATCGATAACATCAAAGCCAAGATTCAAGATAAGGAAGGCATTCCACCCGATCAG 171981 ||||| || || | || || ||||||||||| ||||||||||| ||||| ||||| Sbjct 3645 GACACCATAGAGGCAGTGAAGGCTAAGATTCAAGACAAGGAAGGCATACCACCAGATCAA 3704 Query 171982 CAACGACTTATTTTTGCTGGTAAACAGCTTGAAGATGGACGTACCCTCGCTGATTACAAC 172041 || || |||||||| || ||||||||||||||||||||||| || || | |||||||| Sbjct 3705 CAGCGTCTTATTTTCGCCGGTAAACAGCTTGAAGATGGACGAACACTGTCGGATTACAAT 3764 Query 172042 GTTCAAAAGGAGTCTACTCTACACCTTGTTCTAAGGCTTCGGGGTGGT 172089 |||| || ||||| || |||| |||||||| | ||||| |||||| Sbjct 3765 ATTCAGAAAGAGTCGACATTACATCTTGTTCTTCGTCTTCGTGGTGGT 3812 >seq34618 Length=5665 Score = 138 bits (152), Expect = 1e-27 Identities = 667/1036 (64%), Gaps = 31/1036 (3%) Strand=Plus/Minus Query 195812 CCAACAGCGGCTGCAATTGCTTATGGTCTGGACAAGAACAAGGACGAAGATAAAAATGTA 195871 || || || ||||| | || |||||||| |||||||| | | | || ||||| Sbjct 1138 CCTACTGCTGCTGCTACCGCGTATGGTCTAGACAAGAAGGATGGTGGTGAGCGTAATGTG 1079 Query 195872 TTGATCTTTGATCTCGGTGGTGGTACGTTTGATGTCTC-ACTTCTCAATATTGAAGGTGG 195930 ||||| || ||| | | ||||||||| |||| ||| || || | | | ||||| | || Sbjct 1078 TTGATATTCGATTTGGATGGTGGTACTTTTGGTGTGTCGACCT-TGACAATTGA-GAAGG 1021 Query 195931 TATATTCGAAGTAAAGGCTACTGCTGGTGATACTCATCTAGGTGGTGAAGATTTCGATGC 195990 |||||||||||| || || ||||||||| |||||| | || ||| || || || Sbjct 1020 TATATTCGAAGTGAATTCTGTTGCTGGTGACACTCATTTGGGAGGTAGGGACTTGGACAA 961 Query 195991 ACGTCTTCTCCGTCATTTGTCTG-ATGAGTTCCGTCGAAAGAATAAGAAAGATATTTCTG 196049 | | | | ||| || | || | |||||| || ||| | ||||| |||| || Sbjct 960 CCATTTGGTGAATCACTT-TGTGCAAGAGTTCAAGCGTAAGCACAAGAAGTATATAAGTG 902 Query 196050 GAAATCCTAGGGCTC--TTCGTCGGCTTAGGACTGCATGTGAACGTGCCAAACGAACTCT 196107 | || || | | ||||||| | | || || ||||||| || || || | || Sbjct 901 ACA--CCAAGCGTGCAGTTCGTCGTTTGACAACAGCTTGTGAACTTGGTAAGCGTCCGCT 844 Query 196108 CTCTTCTACGGCTCAAAC--AATGGTTGAGATTGATTCGTTGTTTGACGGAATTGACTTC 196165 || | | || | ||| | |||| ||||||||||| ||| || | ||| || Sbjct 843 GAGCTCAAGTACACAGGCGAAATCG--GAGAGTGATTCGTTGTGTGATGGTAGTGATCTC 786 Query 196166 TATACAACTATTACCCGTGCACGTTTTGAAGAGTTAAACTCTGATTTGTTTA--GGAAGT 196223 || ||| || | | ||| ||||| ||||| || |||||||||| || | | Sbjct 785 TACACAGTGATCATTCATGCTGTATTTGAGGAGTTGAATGCTGATTTGTTCCATGGTACT 726 Query 196224 GTATGGAACCTGTTGAACAAGTACTTCGTGACGCAAAGATGGATAAGTCTAAGGTTGATG 196283 | ||| | ||||| | | | | ||| | ||| |||| ||| || || | ||| Sbjct 725 TTG-GGA--CAGTTGAGTAGGCCTTGAGAGACTCTAAGTTGGACAAGACTCAGATCTATG 669 Query 196284 AAATTGTCCTTGTGGGAGGATCAACCCGTATTCCGAAGATTCAACAGATGCTTTCTAGCT 196343 | ||| | | | || ||||| ||||||| ||||| || |||||||| || Sbjct 668 AGATTATGTTGACCAGTGGTTCAACACGTATTCTCAAGATCCACAAGATGCTTCAGGACT 609 Query 196344 TCTTCAATAATAAAGATTTA-AACAAAACGATCAACCCGGATGAAGCAGTTGCTTATGGT 196402 | | ||| || | || ||||| | || || | ||||| || ||||||| |||| Sbjct 608 TTTCCAACTG-AATGTGGTAGAACAAGTCTATTAATTCTGATGAGGCTGTTGCTTGTGGT 550 Query 196403 GCGGCCGTTCAGGCTGCTATTCTCTCAGGTGTTGACAATAATAACG---TCCAAGATCTT 196459 | || || ||||| || |||| || ||| || | | | ||| | | Sbjct 549 GTAGCTGTGCAGGCGCCTGTTCTGA---GTAATGATAAGTCTGGGGCAGTGCAATACATG 493 Query 196460 CTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGTTATGACT 196519 | | || ||||| || || | || ||||||||||| || || | ||||| |||||| Sbjct 492 TCGTTGCTGGATGTGGCGCCATTGTCACTGGGTCTTGAGACGGCCGTTGGTGCTATGACA 433 Query 196520 AAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTCAACGTAT 196579 | | ||| | | ||||| || || || || ||| || || || | |||| Sbjct 432 GCACTGATTAAGCGTAACACGACGATCCCAAC-AAGCAGACTCAGACGTTCACGACGTGC 374 Query 196580 TCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACGCTCCCGTG-CAAA 196638 || || || || |||||||| | ||||||| | | || |||||||| | || | || Sbjct 373 TCGGACAACCAGCCAGGTGTGCTTATTCAAATGAACGAGGGAGAACG-TGGTTTGACGAA 315 Query 196639 GGATAACCATCTACTTGGAACTTTCGATTTGACGGGGATTCCAGCTGCACCCAGAGGTGT 196698 || ||| || |||| | ||||| ||| | || ||||| |||| || ||||| Sbjct 314 AGACAACAATTCGATTGGTAAATTCGAGTTGTCTGGTGTTCCATCTGCTCCTCTTGGTGT 255 Query 196699 TCCACAGATTAATGTTTGCTTCGATATAGACGCAAATGGAATTCTAAACGTCACAGCTGA 196758 ||| ||||| | || ||| | || || || ||||| ||||| || || ||||| Sbjct 254 TCCTGAGATTGAGGTGACATTCTACATCGATGCTAATGGTATTCTGAATGTGTCAGCTAC 195 Query 196759 GGACAAGGCTTCTGGCAAATCTG-AAAAGATTGTGATTACCAATGACAAGGGGCGGCTTT 196817 |||||| | | | || | | | ||||||| || || ||||| | || || || | Sbjct 194 GGACAA-GAGTATTGCTGAGCGGAAAAAGATAACCATCACGAATGATAGCGGTCGCCTGT 136 Query 196818 CTAAGGAGGAAATTGA 196833 ||||||| || ||||| Sbjct 135 CTAAGGACGATATTGA 120 >seq61046 Length=3119 Score = 84.2 bits (92), Expect = 3e-11 Identities = 123/174 (71%), Gaps = 0/174 (0%) Strand=Plus/Minus Query 196453 AGATCTTCTGCTACTTGATGTTGCACCCGTATCCCTGGGTCTTGAAACAGCGGGTGGTGT 196512 |||| |||| |||||||||||| | || | || || || | |||||| ||||| || Sbjct 2422 AGATGTTCTTCTACTTGATGTTACCCCTTTGTCACTTGGCATAGAAACACTAGGTGGCGT 2363 Query 196513 TATGACTAAAATTATTGATAGGAACACAACTATTCCGACTAAGAAGGAACAAGTCTTTTC 196572 |||||| || |||| || | ||||| ||||| || || |||||| |||||| || || Sbjct 2362 TATGACAAAGCTTATCAATCGAAACACGACTATCCCAACGAAGAAGTCACAAGTATTCTC 2303 Query 196573 AACGTATTCCGATAATCAACCAGGTGTTCATATTCAAGTATATGAAGGAGAACG 196626 ||| | | || ||| || || | || |||||||| |||| ||||| Sbjct 2302 TACGGCTGCTGACGGTCAGACACAAGTAGAAATCAAAGTATATCAAGGTGAACG 2249 >seq52544 Length=3719 Score = 84.2 bits (92), Expect = 3e-11 Identities = 130/183 (71%), Gaps = 2/183 (1%) Strand=Plus/Plus Query 182916 GATGCATCTCGGACATTCTTACACTTTCCC-CGAAGTGGAAAGACGCCGTAATGATCCCT 182974 ||||| || || |||||| | | ||| || || |||||||||||||| |||| ||| || Sbjct 98 GATGCCTCACGCACATTCA-ATAGTTTACCTCGTAGTGGAAAGACGCCATAATTATCTCT 156 Query 182975 TCCAACAACAGAGAGGCCAGCGACAGCGAGTGTCTTTGCCGAGTCACCCTCTGTCACGAT 183034 |||||||| || ||||| ||||| | || || || |||||||| || || | ||| Sbjct 157 ACCAACAACTCCAAGACCAGCTACAGCCAACGTTTTAGCTGAGTCACCTTCAGTTAAGAT 216 Query 183035 GAGTGTACACTTAGAAGATTGGGCTGTCCCAGCTTTGTTTGCGTCATCAAGCTTGGGAAT 183094 || ||||| | || || | || || || || || || ||||| | || ||||| Sbjct 217 AAGCGTACATTGGGATGAGTTTTTAGTACCCGCGTTATTAGCATCATCCAATTTAGGAAT 276 Query 183095 ACC 183097 || Sbjct 277 TCC 279 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 656313388969680