Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7169 152 8e-32 seq27942 91.5 2e-13 >seq7169 Length=15740 Score = 152 bits (168), Expect = 8e-32 Identities = 502/773 (65%), Gaps = 19/773 (2%) Strand=Plus/Plus Query 17980 TAATAATCTATCTGCTACAAATTCGACATATTGTGACATCAAATCGCAATTCATACCTAG 18039 ||| | || ||| || | || || | ||||| |||| || | ||||||||| |||| Sbjct 6209 TAACAGTCGATCAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTAT 6268 Query 18040 TAGTCTGAAAGGTAGAGCATCA-ATAATAAATTCTTTCTCTATCTCAACAGACTCTTTTA 18098 || || | ||||||||| || | || || | || | |||||| | |||| ||||| | Sbjct 6269 CAGGCTAACAGGTAGAGCTTCCGACAAAAACTGCTGT-TCTATCACGACAGCTTCTTTCA 6327 Query 18099 TTATGT--TTATTACCCTAGATTTTGGCAATTTATTAATTATGTGATTATAATATAATAA 18156 | || | | | | || ||| || || || | |||||| ||| | | | Sbjct 6328 TAATCAACTCAATGCGCTC--TTTAGGAGGCTTCTTCACTATGTGTTTAAAC---AGGAG 6382 Query 18157 ACACGCAAAATCAGTGTGTAAACCTTCATCTCTGGATATTAATTCGTTACTAAACGTTAA 18216 ||| || || ||| || || || ||||||||| ||| | ||| ||||| || | | Sbjct 6383 ACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAG 6442 Query 18217 CCCGGGCATTATACCTCttttttttAGCCAAAATATCGATGCGAAACTACTAGAAAAGAA 18276 ||| ||||| | |||| || ||||||||||| || | || ||||||| ||| || || Sbjct 6443 CCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAA 6502 Query 18277 TATACCCTCAACGCACGCGAACGCTATTAATCTTTCAGCAAAACTGTATTTATTGCTCAG 18336 | |||||| || || || || | || | ||| ||||| | | ||| ||| Sbjct 6503 CACACCCTCGACTGCTGCAAAAGCGACTAGACGTTCTGCAAACGTAGACTTAGAA-TCAC 6561 Query 18337 T-ATCCATTTTTGTGCCCATT----CTCCTTNNNNNNNNATACACGGTATACTCTCTATA 18391 ||||| | ||||||| | || ||| | | ||| |||| ||| Sbjct 6562 CGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAACACAATCCAGGT-TACT---TATT 6617 Query 18392 GCATTAAACAAATCATCTTTTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAA 18451 ||||| || | |||| | ||||| || || | ||||| ||||||||||| || || Sbjct 6618 GCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAG 6677 Query 18452 TACATTTCAGAATGTATGCTTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCG 18511 |||||||| || ||||| | || ||||||||||| | || ||| || | | | ||| Sbjct 6678 TACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCG 6737 Query 18512 GGATATTGAATCTCGCTATAAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCA 18571 || || | || | ||| | ||||| || |||||| ||| || || ||| Sbjct 6738 GGGATCTGCACTTCTTGACTAAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTT 6797 Query 18572 GATGCGAAAAATGCCAAAACATATTTAATGAAATGTTTTTCATTATCCTTGAGATTGTTC 18631 | ||||| ||||| || || ||| || ||||| ||| | ||||| || | Sbjct 6798 GCAGCGAAGAATGCTAACACGTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCC 6857 Query 18632 CATTCATCTATATCTTTTGATAGATCAACTTCTTCCGATGTCCAAAAAGATGATTCGGCC 18691 || ||| ||| || || |||| ||| ||||||||| ||||| || |||| | | || Sbjct 6858 CAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCT 6917 Query 18692 TGTTTGTACATTTTATAAATATCTTCATGTTGTATAGGAAATAATATATATCG 18744 | || || | | ||| ||| | || |||||| || || | || | |||| Sbjct 6918 TTCTTATAAAACTGCCAAACATCGTGATATTGTATTGGGAAAAGTACAAATCG 6970 >seq27942 Length=6783 Score = 91.5 bits (100), Expect = 2e-13 Identities = 140/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 155820 AAAATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGAT 155879 || ||||| || ||| | |||||| | || || ||||| || || | ||||| ||| | Sbjct 3582 AAGATGCAGATTTTTGTGAAAACACTAACGGGGAAAACCATAACCCTTGAAGTTGAACCT 3641 Query 155880 TCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAA 155939 |||| | || ||||| ||| || ||||| || ||||||||||| ||||| Sbjct 3642 GCTGACACCATAGAGGCAGTGAAGGCTAAGATTCAAGACAAGGAAGGCATACCACCAGAT 3701 Query 155940 CAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTAT 155999 ||||| | | |||| |||||||| ||||| |||||| |||| | || ||||| Sbjct 3702 CAACAGCGTCTTATTTTCGCCGGTAAACAGCTTGAAGATGGACGAACACTGTCGGATTAC 3761 Query 156000 AATATATCCAAAGAGGCGAC 156019 ||||| |||||| |||| Sbjct 3762 AATATTCAGAAAGAGTCGAC 3781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 730148725040400