Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_021248.1 Length=307691 Score E Sequences producing significant alignments: (Bits) Value seq27942 141 2e-28 seq7169 113 9e-20 >seq27942 Length=6783 Score = 141 bits (156), Expect = 2e-28 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 192299 GTTTAATAATACCACCTCTAAGACGTAATACTAAATGTAAAGTAGCCTCTTTAGAGATAT 192358 ||| |||||||||||| | |||||| | || | |||||| || | |||||| |||| Sbjct 3822 GTTCAATAATACCACCACGAAGACGAAGAACAAGATGTAATGTCGACTCTTTCTGAATAT 3763 Query 192359 TATAATCAGATAATGTTCGTTCATCATCCAATTGTTTACCAGCAAAGATTAATCTCTGTT 192418 | ||||| || | ||||||| |||| || | |||||||| || || || | | ||||| Sbjct 3762 TGTAATCCGACAGTGTTCGTCCATCTTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTT 3703 Query 192419 GATCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGAATCTG 192478 |||| |||||||| ||||| || ||||| || ||| || || ||| | || | Sbjct 3702 GATCTGGTGGTATGCCTTCCTTGTCTTGAATCTTAGCCTTCACTGCCTCTATGGTGTCAG 3643 Query 192479 ACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATAAATATCTGCATTT 192538 | ||| ||||| || || |||||||| || |||| |||||| | ||| |||||||| | Sbjct 3642 CAGGTTCAACTTCAAGGGTTATGGTTTTCCCCGTTAGTGTTTTCACAAAAATCTGCATCT 3583 Query 192539 T 192539 | Sbjct 3582 T 3582 >seq7169 Length=15740 Score = 113 bits (124), Expect = 9e-20 Identities = 373/588 (63%), Gaps = 0/588 (0%) Strand=Plus/Plus Query 49823 ACATGCAAAATCAGTATGTAAACCCTCGTCCCTAGATATAAATTCATTACTAAAAGTTAA 49882 ||| || || ||| ||| || ||||| || || ||| | ||||||||| || | | Sbjct 6383 ACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAG 6442 Query 49883 TCCTGGCATTAATCCTCTCTTTTTAAGCCAAAATATTGATGCAAAACTACTAGAAAAGAA 49942 || ||||| | ||||| ||| || |||||||| || | |||||||||| ||| || || Sbjct 6443 CCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAA 6502 Query 49943 TATACCCTCGACACACGCAAATGCTATTATTCTTGCTCCAAACATTAATTTATCATCTAA 50002 | ||||||||| ||||| || | || | | || ||||| | | ||| ||| Sbjct 6503 CACACCCTCGACTGCTGCAAAAGCGACTAGACGTTCTGCAAACGTAGACTTAGAATCACC 6562 Query 50003 TATCCAATTTATAGCCCAATCTGCtttttttttGATAGAAGGTATATTTTCTATAGCTTT 50062 ||||| | | ||||| | || || || | | || | || ||| || || Sbjct 6563 GATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAACACAATCCAGGTTACTTATTGCATT 6622 Query 50063 AAATAATTCAtttttttCATNNNNNNNNNNNNNNNNNNNNNNNATTAATAAAGAATACAT 50122 || | || | | || | |||||||| || ||||| Sbjct 6623 GAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACAT 6682 Query 50123 TTCAGAATGTACAGCTTCCATAGCTATTTGAAATGAATAAAATTGTCTTGCTTCTGAATA 50182 ||| || |||| | || |||||||| || | ||| || | |||| | Sbjct 6683 TTCGGAGTGTATATTCTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGAT 6742 Query 50183 CTGAACTTCGGAAAAGAATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGC 50242 ||| ||||| | || ||||| | ||| |||||| || || |||||| ||| || Sbjct 6743 CTGCACTTCTTGACTAAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGC 6802 Query 50243 GAAGAATGCTAAAACGTATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGA 50302 |||||||||||| |||||| |||||||| ||| |||| | |||||| Sbjct 6803 GAAGAATGCTAACACGTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATC 6862 Query 50303 TTCAAGATCGTTTGATAAATCTACTTCTTCTATTGTCCAAAATGATGCTACGGATTTTTT 50362 | | || || ||||||||||||||||| | ||||| || |||||||| | ||| || Sbjct 6863 AACTAAGTCCTTGGATAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTT 6922 Query 50363 ATACATTTGATATATATCAAAATGTTCAATGGGAAATAGTACATATCG 50410 ||| | || | | ||| || || || || || |||||| |||| Sbjct 6923 ATAAAACTGCCAAACATCGTGATATTGTATTGGGAAAAGTACAAATCG 6970 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982103979363150