Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_021249.1 Length=282895 Score E Sequences producing significant alignments: (Bits) Value seq27942 125 1e-23 seq7169 86.0 1e-11 seq86813 84.2 4e-11 >seq27942 Length=6783 Score = 125 bits (138), Expect = 1e-23 Identities = 175/244 (72%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 171830 TAGTTTCA-TAATACCACCTCTAAGTCGTAATACTAAATGTAAAGTAGCCTCTTTAGAAA 171888 ||| |||| |||||||||| | ||| || | || | |||||| || | |||||| || Sbjct 3825 TAGGTTCAATAATACCACCACGAAGACGAAGAACAAGATGTAATGTCGACTCTTTCTGAA 3766 Query 171889 TATTATAATCTGATAAAGATCGTTCGTCATCCAATTGTTTACCAGCAAAAATTAATCTCT 171948 |||| ||||| || | | |||| | || || | |||||||| || ||||| | | || Sbjct 3765 TATTGTAATCCGACAGTGTTCGTCCATCTTCAAGCTGTTTACCGGCGAAAATAAGACGCT 3706 Query 171949 GTTGGTCAGGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTAT 172008 |||| || |||||||| ||||| || ||||| || ||| || || ||| || | Sbjct 3705 GTTGATCTGGTGGTATGCCTTCCTTGTCTTGAATCTTAGCCTTCACTGCCTCTATGGTGT 3646 Query 172009 CTGACGATTCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCA 172068 | | | ||| ||||| || || |||||||| || |||| |||||| | || ||||||| Sbjct 3645 CAGCAGGTTCAACTTCAAGGGTTATGGTTTTCCCCGTTAGTGTTTTCACAAAAATCTGCA 3586 Query 172069 TTTT 172072 | || Sbjct 3585 TCTT 3582 >seq7169 Length=15740 Score = 86.0 bits (94), Expect = 1e-11 Identities = 119/167 (71%), Gaps = 0/167 (0%) Strand=Plus/Plus Query 39501 AATCGTTCAACTAAATTCTCAGATACAATACCATCAGATGCTGCGAAGAATGCTAAAACA 39560 || ||||| | ||| |||||| || || |||||| ||| |||||||||||||| || Sbjct 6759 AAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACG 6818 Query 39561 TATTTAATAAAATGTTTTTCATTATCTTTTAAATTTTCCCAAGATTCAAGATCGTTTGAT 39620 ||| |||||||| ||| |||| | |||||| | | || || ||| Sbjct 6819 TATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGAT 6878 Query 39621 AAATCTACTTCTTCTATTGTCCAAAAAGATGCTACGGATTTTTTATA 39667 |||||||||||||| | ||||| || |||||||| | ||| ||||| Sbjct 6879 AAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATA 6925 >seq86813 Length=1953 Score = 84.2 bits (92), Expect = 4e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 171957 GGTGGTATTCCTTCTTTATCTTGTATTTTATTTTTTACATTAGTTATAGTATCTGACGAT 172016 ||||| || |||||||||||||| || || ||| ||||| || ||||| || Sbjct 3 GGTGGGATACCTTCTTTATCTTGGATCTTGGCTTTCACATTCTCAATCGTATCACTCGGC 62 Query 172017 TCTACTTCTAGAGTAATGGTTTTACCAGTTAATGTTTTAATGAATATCTGCATTTT 172072 || ||||| ||||| || || || |||||||||||||| | ||| |||||||| || Sbjct 63 TCGACTTCCAGAGTTATTGTCTTGCCAGTTAATGTTTTCACGAAGATCTGCATGTT 118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903004755460200