Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq25209 127 6e-24 seq7169 104 7e-17 seq40166 89.7 2e-12 >seq25209 Length=7363 Score = 127 bits (140), Expect = 6e-24 Identities = 216/308 (70%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||||| |||||||| ||||||||||| ||| | || || ||||||||| Sbjct 2836 TCCATAGCTTTGATCAAACGACGTTGAATATAACCTGTTTCTGCAGTCTTGACAGCTGTA 2895 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGTAGCCCC 302694 ||||| | ||| | ||||||||||| ||||| ||||| | || ||| || ||| Sbjct 2896 TCAATCAAACCTTCTCGACCACCCATTGCATGAAAGAAAAATTCAGTGGGTGTTAACCCT 2955 Query 302695 CCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGG-TAAA 302753 ||| | | || |||| ||||| ||||| | ||| || || || | ||||| | || Sbjct 2956 GCAAGATACGAATTCTCCACGAACCCACGAGACTCAGGACCATAATC-ATCTTGGATGAA 3014 Query 302754 GTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTG 302813 |||||| | || | | | | || | ||||| | ||| || |||||||| || || Sbjct 3015 GTGTGGTAAAGTACGATGACGAAAACCAAAAGGGATTCTCTTACCCTCAACGTTTTGTTG 3074 Query 302814 TCCCAGGCACGAAATCATCTGCGAAATATTTAAATC-ACTGCCCTTGGAGCCAGCATTTA 302872 |||| |||| ||| | ||| || ||| |||| || | || || || |||||| | Sbjct 3075 ACCCACACACGCAATGACCTGGGATATA-TTAATTCGAGAACCTTTAGACCCAGCAACAA 3133 Query 302873 CCATAATA 302880 |||||||| Sbjct 3134 CCATAATA 3141 >seq7169 Length=15740 Score = 104 bits (114), Expect = 7e-17 Identities = 361/555 (65%), Gaps = 14/555 (3%) Strand=Plus/Minus Query 133076 TTTGTTATGTTCCCAATTAAGGACGACGAGATTTGGCAGATGTATAAAAAACAGCAAGAT 133135 ||||| | |||||||| | | |||| |||||||| | ||||| ||| || Sbjct 6967 TTTGTACTTTTCCCAATACAATATCACGATGTTTGGCAGTTTTATAAGAAAGCTGTAGCA 6908 Query 133136 TTATTTTGGACTTCAACTGAAGTAGATTTATCCAAAGACCCAGCCCACTGGGAAGCCCTT 133195 | || |||||| ||||||||||||||||| ||| || | ||||| |||| Sbjct 6907 TCGTTCTGGACTGTGGAAGAAGTAGATTTATCCAAGGACTTAGTTGATTGGGACTCCCTC 6848 Query 133196 ACTGGGGATGAAAAACATTTTATTTC-TATGATTTTAGCGTTTTTTGCTGCGAGTGATGG 133254 | | || ||| |||||||| || || | | ||||| || || ||||| |||||||| Sbjct 6847 AAAGTGGGAGAACGTCATTTTATATCATACG-TGTTAGCATTCTTCGCTGCAAGTGATGG 6789 Query 133255 TATTGTTCTTGAAAATTTAGGAACACGGTTTATGGGAGAAGTTCAACTGGCCGAAGCCCG 133314 || |||||||| || ||| | ||| |||| |||||| || | |||||| ||| Sbjct 6788 AATCGTTCTTGAGAACTTACTAGAACGTTTTAGTCAAGAAGTGCAGATCCCCGAAGTCCG 6729 Query 133315 TGCCTTTTATGGGCTACAGATTGCGATGGAAAATATCCATTCTATCACATATTCTACT-- 133372 | || ||||| | ||||| || || || ||||| || || | || | || || Sbjct 6728 TTGTTTCTATGGTATGCAGATAGCTATTGAGAATATACA--CTCCGAAATGTACTCCTTA 6671 Query 133373 CTAATTGATACTTACATCAAAGATACCGTCCAGAAGCACAAACTATTCAACGCCATTAGC 133432 |||| || || || || | || | ||| | || ||||| || || || Sbjct 6670 TTAATCGACACATATATTAGGGACTCGAAAGAGAGAGATTTCCTTTTCAATGCAATAAGT 6611 Query 133433 GAATTTCCTTGTATTAAAAAGAAATCTGACTGGGCTATTAAATGGATCCAGGA---CAAG 133489 | | |||| || ||||| || | ||||| | | |||||| || ||| Sbjct 6610 AACCTGGATTGTGTTGCTAAGAAGGCTCAGTGGGCACTGGACTGGATCGGTGATTCTAAG 6551 Query 133490 CGTGCGAGTTTTGCTACTCGTCTCGTTGCTTTTGCTGTAGTAGAGGGCAtttttttCAGT 133549 | || ||||| ||||| || |||||||| | ||| ||||| | |||||| | Sbjct 6550 TCTACG---TTTGCAGAACGTCTAGTCGCTTTTGCAGCAGTCGAGGGTGTGTTTTTCTCT 6494 Query 133550 GGTGCGTTCTGC-TCTATTTTTTGGCTTAAAAAGCGTGGTATTCTACCTGGACTGTGTTT 133608 ||| ||| ||| |||| |||||||| || ||||| || || | || || |||| || Sbjct 6493 GGT-AGTTTTGCGGCTATCTTTTGGCTAAAGAAGCGAGGACTTATGCCGGGGCTGTCATT 6435 Query 133609 TTCTAACGAACTTAT 133623 ||| ||||| || Sbjct 6434 CAGTAATGAACTCAT 6420 >seq40166 Length=4916 Score = 89.7 bits (98), Expect = 2e-12 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 289021 CtttttttACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTC 289080 || ||| ||||||||| ||||||||||||||| || || | ||| || || ||||| | Sbjct 4489 CTATTTCTACCAACAGAATCAATTTCGTCAATAAATATTAAACAAGGTGAGTTTTGCTTA 4430 Query 289081 GCAATTGCAAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAA 289139 ||| ||||||| || ||| ||||| || || ||||| || ||| ||| ||| |||| Sbjct 4429 GCAGCAGCAAATAGTTGTCTAACACGAGAAGCCCCAAGTCCGACAAACACCTCTTCAAA 4371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1468265400878353