Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq14914 168 5e-36 seq52544 104 2e-16 seq25209 91.5 1e-12 >seq14914 Length=10545 Score = 168 bits (186), Expect = 5e-36 Identities = 431/655 (66%), Gaps = 6/655 (1%) Strand=Plus/Plus Query 282194 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 282253 ||||||||||| || |||| | |||| || ||| || |||| || | |||| Sbjct 6588 TCAAAATCTTCCCCACCCAGATGTGTATCACCATTCGTGGCAACCACTTCAAACACTCCA 6647 Query 282254 TCTTCAAGAGACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 282313 | |||| || | | || |||||| || ||||| || | |||||||| || | | Sbjct 6648 TTCTCAATAGTGAGCAAAGAAACATCGAACGTACCACCCCCAAGATCAAAAACGAGGATA 6707 Query 282314 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 282373 ||| | || |||| |||| || ||||| || |||| ||||| ||||||||||| Sbjct 6708 TTCTTCTCACCTTCTT---TTTTGTCCAGACCGTAGGCAATCGCAGCTGCAGTTGGTTCG 6764 Query 282374 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 282433 |||||||| | | ||||| | || ||||| | || |||||||| || || || | | Sbjct 6765 TTAATAATACGAAGTACATTCAACCCTGCAATGGTACCAGCATCTTTTGTTGCCTGACGT 6824 Query 282434 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATA 282493 || | ||| | || || || || ||||||| ||||||| ||| || | ||| || | | Sbjct 6825 TGAGCATCACTGAAGTAGGCTGGCACAGTAACTACGGCATGTGTCACCTTTTTACCCAAA 6884 Query 282494 TAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGAGAA 282553 || || || ||| |||||| || | ||| | ||| | || || | |||||||| | Sbjct 6885 TATGCTTCAGCACTTTCTTTCATCTTTCCTAAGACCATAGCAGATATCTCTTCTGGAGCA 6944 Query 282554 TATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACCAACATTAATA 282613 | ||| | ||| | | ||||||| ||| ||||| || || | | Sbjct 6945 AACGACTTTGTATCAGCACCAACTTTCACTTCAACATAGGGTTTGTTCTTTTTGTTGACA 7004 Query 282614 ACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAAATCTCTACCA 282673 ||||| || || | | || ||||| ||| || || |||| |||| ||| ||| Sbjct 7005 ACTTTGAAAGGGTAGTGCTTAATATCGTCTTGTACTGACTGCTCATCAAAAGTTCTTCCA 7064 Query 282674 ATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTGCAGCTTGATATTTGGCT 282733 || | || || ||||||||| || || || || | | ||| | |||||| Sbjct 7065 ATGAGTCTCTTGACATCAAAAACTGTGTTTTCAGGGTTGGAGGTAAGTTGGTGTTTGGCA 7124 Query 282734 GCATCTCCAATCAGATGTTCTGTCTCTGTA---AATGAAACATATGATGGAGTTGTGCGA 282790 ||||||||||| || |||| || ||| |||| ||||| || || || | | | Sbjct 7125 GCATCTCCAATAAGCCGTTCACCTTCCGTAGTGAATGCCACATAAGAAGGCGTAATCCTA 7184 Query 282791 TTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACCTACAC 282845 || || ||||| || || || ||||| ||| | ||| || |||| || |||| Sbjct 7185 TTTCCCTGATCGTTGGCGATTATTTCCACTCTTCCACCCTGAAATACCCCAACAC 7239 >seq52544 Length=3719 Score = 104 bits (114), Expect = 2e-16 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 400252 AAATTATATAATGCTCACAAAGCAGGAACCAAAGAAGGATATAAATGTACCCTAATTTTG 400311 ||||| || ||||| | || || || || ||| | || ||||||| || || || Sbjct 270 AAATTGGATGATGCTAATAACGCGGGTACTAAAAACTCATCCCAATGTACGCTTATCTTA 211 Query 400312 ACAGAGGGAGATTCAGCTAAAACATTCGCTATGTCTGGCCTTAATGTTATTGGAAGAGAT 400371 || || || || ||||||||||| || ||| | |||| ||| ||| |||| |||||| Sbjct 210 ACTGAAGGTGACTCAGCTAAAACGTTGGCTGTAGCTGGTCTTGGAGTTGTTGGTAGAGAT 151 Query 400372 TATTATGGAGTTTTCCCACTTAGAGGAAAACTTTTGAATGTTAGGGATGCTAGTCCTaaa 400431 ||||||| || || ||||| |||| ||||| |||||||| | || || |||| Sbjct 150 AATTATGGCGTCTTTCCACTACGAGGTAAACTATTGAATGTGCGTGAGGCATCAAGTAAA 91 Query 400432 aaaaTTGCCGATAATGAGGAAATTACAGCAATCaaaaaaaTTGTTGG 400478 |||| | || |||| ||||| | ||| | | |||||| |||| Sbjct 90 CAAATAGTGGAGAATGCAGAAATCAATGCATTGATTAAAATTCTTGG 44 >seq25209 Length=7363 Score = 91.5 bits (100), Expect = 1e-12 Identities = 142/204 (70%), Gaps = 8/204 (4%) Strand=Plus/Minus Query 432255 AAAGTCACTAAATCAATGTCTGAAAGATTGAGAGGTAAAGAAGGTCGTATTAGAGGAAAT 432314 ||||||| | || ||| |||| |||| | |||| ||||||||| | || ||| Sbjct 4539 AAAGTCAATCAAACAACGTCTTAAAG--------GCAAAGCTGGTCGTATTCGTGGCAAT 4488 Query 432315 TTGATGGGAAAGCGTGTCGATATGTCTGCACGTACAGTTATTACTTCTGATCCTAATATT 432374 | ||||| || ||||| || | ||||| ||||| || ||||| ||||||| ||| || Sbjct 4487 CTTATGGGTAAACGTGTTGACTTCTCTGCTCGTACTGTCATTACAGCTGATCCAAATCTT 4428 Query 432375 GCTCTCAATGAAGTTGGTGTTCCTCTCATTATTGCGAAAAATCTTACTTTTGACGAAATT 432434 | || ||||||||||||| | ||| || ||||||| |||| | ||||| Sbjct 4427 AACTTAGATCAAGTTGGTGTTCCAAGAACTATAGCTCAAAATCTAACTTATCCTGAAATG 4368 Query 432435 GTAACAGAACATAATATTGATTAT 432458 || ||| || ||| || ||| || Sbjct 4367 GTTACACAATTTAACATAGATCAT 4344 Score = 86.0 bits (94), Expect = 5e-11 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 435132 TGAATTTTTCTTCCAAGTAATGGCTGGTCGTGAAGGTATTATTAATACAGCTATTAAAAC 435191 |||||||||||| || | ||||| |||||| |||||| | ||| |||||||| | || || Sbjct 2940 TGAATTTTTCTTTCATGCAATGGGTGGTCGAGAAGGTTTGATTGATACAGCTGTCAAGAC 2881 Query 435192 TGCTGATACTGGTTATATTCAA 435213 ||| || || |||||||||||| Sbjct 2880 TGCAGAAACAGGTTATATTCAA 2859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3731382278147394