Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq27942 134 3e-26 seq86813 113 9e-20 seq101830 89.7 1e-12 >seq27942 Length=6783 Score = 134 bits (148), Expect = 3e-26 Identities = 167/229 (73%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | | ||| ||||| | || | || || |||||||| ||||| ||||| | Sbjct 3813 TACCACCACGAAGACGAAGAACAAGATGTAATGTCGACTCTTTCTGAATATTGTAATCCG 3754 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||| || ||||| || ||||| || || || || || | ||||||||||| | Sbjct 3753 ACAGTGTTCGTCCATCTTCAAGCTGTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTG 3694 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 |||| |||||||| ||||||||||| || || || || || || ||| |||||| | Sbjct 3693 GTATGCCTTCCTTGTCTTGAATCTTAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAA 3634 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| | ||||| || || || || | || || ||||| |||||||| Sbjct 3633 CTTCAAGGGTTATGGTTTTCCCCGTTAGTGTTTTCACAAAAATCTGCAT 3585 >seq86813 Length=1953 Score = 113 bits (124), Expect = 9e-20 Identities = 94/115 (82%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 82696 CTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAG 82755 |||| || || ||||| |||||||| ||||| ||||| ||||| |||||||||||| | | Sbjct 1 CTGGTGGGATACCTTCTTTATCTTGGATCTTGGCTTTCACATTCTCAATCGTATCACTCG 60 Query 82756 GTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || ||||||| |||||| |||||||| || || || || || || |||||||| Sbjct 61 GCTCGACTTCCAGAGTTATTGTCTTGCCAGTTAATGTTTTCACGAAGATCTGCAT 115 >seq101830 Length=1534 Score = 89.7 bits (98), Expect = 1e-12 Identities = 70/84 (83%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 82728 GCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTC 82787 || || ||||| || ||||||||| |||| || || ||||| || |||||||| || ||| Sbjct 1532 GCCTTCACATTCTCGATCGTATCACTAGGCTCCACCTCCAACGTAATCGTCTTACCAGTC 1473 Query 82788 AACGTCTTTACAAATATCTGCATT 82811 |||||||| || |||||||||||| Sbjct 1472 AACGTCTTCACGAATATCTGCATT 1449 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 979457581837091