Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq28879 129 1e-24 seq25209 91.5 3e-13 seq3279 87.8 4e-12 seq22907 86.0 1e-11 seq6235 84.2 5e-11 >seq28879 Length=6601 Score = 129 bits (142), Expect = 1e-24 Identities = 219/317 (69%), Gaps = 3/317 (1%) Strand=Plus/Plus Query 110688 GTTCCAATGTTAAGAGTCTTCAACGACACTGCAAAATATGTGAATCAAGGTGGTAAGAGA 110747 ||||| ||||| | || || ||| | |||||| ||||| ||||||| || || | | Sbjct 3584 GTTCCGATGTTGCGCGTATTTAACAATACTGCACGCTATGTTGATCAAGGAGGCAACAAA 3643 Query 110748 AAT---GGCTCATTTGCTATCTATCTCGAACCTTGGCATTCAGATATATTTGAATTCTTA 110804 | ||| |||||||||| ||| | |||||||||||| | ||| ||||| | || || Sbjct 3644 CGTCCAGGCGCATTTGCTATGTATTTGGAACCTTGGCATCCCGATGTATTTCAGTTTGTA 3703 Query 110805 GAACTTCGTAAAAATCAAGGATTTGAAGAACAAAGAGCACGTGATTTATTTTATGCAATG 110864 ||| | || |||||| ||| ||||||| |||| || ||||| || | ||| | Sbjct 3704 GAAATGCGCAAAAATACAGGCGCTGAAGAAGTTCGAGCTCGAGATTTGTTCTTTGCTCTA 3763 Query 110865 TGGATTTCAGATTTATTCATGAAACGTGTTCAAGAAAATGGCATGTGGTCTCTTATGTGT 110924 ||||| | || | |||||| |||||| ||| || | | ||| | | ||| | Sbjct 3764 TGGATACCTGACATTTTCATGCGTCGTGTTGAAGCTAACGATAAATGGACATTGATGGAT 3823 Query 110925 CCTCATCGTTCTCCTGGTCTATCTGATGTATATGGAAAAGAGTTTGAAGACCTTTACGAA 110984 |||||| | ||| ||| | | || ||| || ||||||| |||| ||||| ||| Sbjct 3824 CCTCATGAATGTCCAGGTTTGCCAGAACTATGGGGTGAAGAGTTCGAAGCTCTTTATGAA 3883 Query 110985 AAATATGAAAAAGAAGG 111001 |||||||| |||||| Sbjct 3884 CAATATGAACGAGAAGG 3900 >seq25209 Length=7363 Score = 91.5 bits (100), Expect = 3e-13 Identities = 178/260 (68%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 304887 TACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGGAATTATGC---AGGCAT 304943 |||||| ||| | ||||| | | |||||||| | |||| | ||| |||| Sbjct 4618 TACAATTCCATGTAACAACAATGGTTGATAATGATGTACCTGG---TCTGCCTAAGGCGA 4562 Query 304944 CTCAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGTC 305003 ||||| |||||| | || |||||| || | ||||| ||||||| |||| |||| Sbjct 4561 TTCAAAAATCTGGACGTCCATTAAAGTCAATCAAACAACGTCTTAAAGGCAAAGCTGGTC 4502 Query 305004 GTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAGAAGTGTAATCACAC 305063 ||||||| || ||||| ||||| ||||||||||| || ||| | | ||| || ||| Sbjct 4501 GTATTCGTGGCAATCTTATGGGTAAACGTGTTGACTTCTCTGCTCGTACTGTCATTACAG 4442 Query 305064 CTGATTCTCAAATTAGTCTTCATGAATTAGGAGTTCCAATTGAA--ATTGCTTTAAAACT 305121 ||||| | | ||| | || || | || ||||||| ||| || ||| ||| || Sbjct 4441 CTGATCCAAATCTTAACTTAGATCAAGTTGGTGTTCCAA--GAACTATAGCTCAAAATCT 4384 Query 305122 AACATTTCCAGAGAAAGTTA 305141 ||| | ||| || | |||| Sbjct 4383 AACTTATCCTGAAATGGTTA 4364 >seq3279 Length=21710 Score = 87.8 bits (96), Expect = 4e-12 Identities = 173/253 (68%), Gaps = 10/253 (4%) Strand=Plus/Minus Query 167240 CATTACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAA 167298 ||| | |||||| |||||||| ||||| | | || ||||| ||||| || |||| ||||| Sbjct 12930 CATCATACCACCGGCATTATCAAATTC-TCCACAGTAATTAGGTGCAGAGAATAAAGTAA 12872 Query 167299 CTAATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTA 167358 | || | |||| | || |||||| ||||||||||||| |||| ||| || || | Sbjct 12871 CCAACTGACGACGACAGAAAAATTCAAAACCATCTTCAACTACTTGATGTGCTCG----A 12816 Query 167359 CAAGTTCAACTCCTAt----ttttttAAGAAAATTAGTTAAAGCACGTAATCCAAATTTA 167414 ||| || || | ||| | ||||| || || || | || | |||||| || Sbjct 12815 CAAATTAAATCCATATCATGTCGGTTAAGGAATTTGGTGACTACATCTGGACCAAATGTA 12756 Query 167415 TAACTACAACCTCTTTCAGATTCAGAATAATAATCAATATCATGCGATGGATCCGCCCAA 167474 |||| || | ||| ||||| || || || ||| | |||||||| ||| Sbjct 12755 AAACTGACGCCACGATCATTTTCAGCCCAACCATTAACATCCTTATCTGGATCCGACCAT 12696 Query 167475 AGAAGATCGCATA 167487 |||| |||||||| Sbjct 12695 AGAATATCGCATA 12683 >seq22907 Length=7929 Score = 86.0 bits (94), Expect = 1e-11 Identities = 96/126 (76%), Gaps = 2/126 (2%) Strand=Plus/Minus Query 167243 TACACCACCAGCATTATCGAATTCATTCGCA-TAATTTGGTGCTGAAAATACAGTAACTA 167301 |||| | ||||||| || |||||| | || ||||| ||||||||||||| || |||| Sbjct 3089 TACAGCTGCAGCATTGTCAAATTCAC-CACAGTAATTCGGTGCTGAAAATATTGTCACTA 3031 Query 167302 ATTTACGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGCACGTATTACAA 167361 || ||||| | | |||||||| |||||||||||||||| ||| || | | || || Sbjct 3030 ATGACCGATTTGCATAAAATTCATAGCCATCTTCAACAACTTGATGTGCTCTAACTATAA 2971 Query 167362 GTTCAA 167367 | |||| Sbjct 2970 GATCAA 2965 >seq6235 Length=16775 Score = 84.2 bits (92), Expect = 5e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 167247 CCACCAGCATTATCGAATTCATTCGCATAATTTGGTGCTGAAAATACAGTAACTAATTTA 167306 ||||| ||||| || |||||| |||||| ||||| || || | |||||| ||| | Sbjct 12626 CCACCTGCATTGTCAAATTCACCACAATAATTCGGTGCAGAGAAGATAGTAACAAATGAA 12567 Query 167307 CGATTGAAAAATAATTCATAACCATCTTCAACAACTTCATGGGC 167350 |||||| || ||||||||||||||||| ||||||| ||| || Sbjct 12566 CGATTGGCGAAAAATTCATAACCATCTTCTACAACTTGATGTGC 12523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1183948453639609