Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq7169 219 6e-52 seq28879 131 2e-25 >seq7169 Length=15740 Score = 219 bits (242), Expect = 6e-52 Identities = 597/912 (65%), Gaps = 44/912 (5%) Strand=Plus/Plus Query 39328 TTGGTATTCACCAACGCGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 39387 ||||||||| ||||| ||||| || || ||||| || || ||||| | |||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 39388 CATGAAATCAAACGGATT-----------------AGTTGCA-TTATAttttt------- 39422 ||| || || || || || || || | |||||| | Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 39423 --------ttttAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGT 39474 ||| | | || | ||| | || || ||| || | || || |||||| Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 39475 TTTCATCATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTC 39534 ||| | || |||||||||||||| || |||| |||||||| |||| | ||||| Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 39535 TTTTTCGATGTCTACGGCCTCTGTTATTATCGATGTTACTAC-CTCATCACTCGGTGGAT 39593 | ||| || | || || ||| | || ||| | | | | | ||| | | || | Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAAC-TCAATGCGCTCTTTAGGAGGCTTCT 6360 Query 39594 GCAATAAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAA 39653 || || |||||||||| | || |||||||||||||| | ||||||||||| || | Sbjct 6361 TCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCTTA 6420 Query 39654 TTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGG 39713 | | ||| ||| |||| || || ||||| || || ||||| || |||||||| || | Sbjct 6421 TGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGATAG 6480 Query 39714 CAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCT- 39772 | |||||| ||||| || || | || || ||||||||||| || || || | ||| Sbjct 6481 CCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTCTG 6540 Query 39773 ---CCGTA-ACTTGTATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTAC 39828 |||| ||| || || | ||||| | | ||||||| | ||| ||||| || Sbjct 6541 CAAACGTAGACT--TAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAAC 6598 Query 39829 ACAAGGCATTGTTTC-TATAGCATTAAAGAGATAATGTTTTTCATCACTATCTTTAACAT 39887 |||| || ||| | ||| ||||| || || ||| | | || | || ||| || Sbjct 6599 ACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATAT 6657 Query 39888 ATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATC 39947 |||| || ||||| | |||||||| || || || || ||||| || ||||| | | Sbjct 6658 ATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATAC 6717 Query 39948 CGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTT 40007 | || ||||| | |||| | || || || ||| || ||| | ||| || || | Sbjct 6718 CATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAACGTTCTAGTAAGTTCT 6777 Query 40008 CATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 40067 || || ||||||||||| || || || ||||| || || | | ||||||| || Sbjct 6778 CAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACGTT 6837 Query 40068 CATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 40127 | | | | | | ||| ||| | || || |||| |||||||||||| | | Sbjct 6838 CTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCACAG 6897 Query 40128 TCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATCACGATATTGTATTGGAA 40187 |||| ||||| || | || || || || | | ||| | ||| ||||||||||||| | Sbjct 6898 TCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTGGGA 6957 Query 40188 AAATAACAAATC 40199 ||| ||||||| Sbjct 6958 AAAGTACAAATC 6969 >seq28879 Length=6601 Score = 131 bits (144), Expect = 2e-25 Identities = 182/255 (71%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 69807 ACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTCTTGCGCGAATATTACTAAT 69866 ||||||||||| |||||| ||||||| |||||| | || |||||| ||| | Sbjct 3482 ACCATTAGATTCACCATTCGTTCCAGCTATATAAGTACCAAGACTGCGAATGTTATGCAC 3423 Query 69867 AGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAACGTTTCAATGTGTCATA 69926 |||||||| || || || ||||||| || | |||||| ||| ||||| ||||| Sbjct 3422 GTTCAGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATA 3363 Query 69927 TATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 69986 || ||||| || |||||||| |||| ||| || || || || || | ||| | | Sbjct 3362 AATCCCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTT 3303 Query 69987 TATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAACCATTTTTCAGAAAGCAG 70046 | ||||| ||||| || | || ||||| || || || ||||||||||| || | || Sbjct 3302 TGGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAG 3243 Query 70047 ATTGTATGTTTCAAT 70061 ||||||||| | ||| Sbjct 3242 ATTGTATGTCTAAAT 3228 Score = 86.0 bits (94), Expect = 9e-12 Identities = 100/133 (75%), Gaps = 4/133 (3%) Strand=Plus/Minus Query 69016 TAAATTGTTTCGAAAATCTTC--TTATTGAGATCTTGTGCTTCTAGACTATCGAATGGAT 69073 || ||||| || |||| ||| || || || ||| |||||| | || ||||| |||| Sbjct 4969 TAGATTGTCTC--AAATATTCGTTTGTTAAGGTCTGATGCTTCAGGGCTGTCGAAGGGAT 4912 Query 69074 AATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACCGATAGGTCTATGTC 69133 | | |||| ||||| ||||||||||||||| |||||||| ||||| |||| ||| | Sbjct 4911 ACCTCATAAGACAAAATGTATCTGCCAATCCCTGTACCCCAATCCCGATCGGTCGATGAC 4852 Query 69134 TCTTATTTGAACT 69146 | ||||||| || Sbjct 4851 GCATATTTGACCT 4839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 685291395953160