Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq7169 140 3e-28 seq3532 116 3e-21 >seq7169 Length=15740 Score = 140 bits (154), Expect = 3e-28 Identities = 589/926 (64%), Gaps = 43/926 (5%) Strand=Plus/Minus Query 43700 TTTGTCGTGTTTCCAATTCAATATCATGACATATGGCAAATGTACAAAAAAGCACAGGCG 43759 ||||| | || ||||| |||||||| || | ||||| | || || ||||| || Sbjct 6967 TTTGTACTTTTCCCAATACAATATCACGATGTTTGGCAGTTTTATAAGAAAGCTGTAGCA 6908 Query 43760 TCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAAGACTTAGCACATTGGATTGCATTA 43819 || || ||||| | |||||||| ||||| | || ||||||| ||||| | | Sbjct 6907 TCGTTCTGGACTGTGGAAGAAGTAGATTTATCCAAGGACTTAGTTGATTGGGACTCCCTC 6848 Query 43820 AAACCACAAGAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGG 43879 ||| |||| ||||||||||| | || || || || || ||||| || || || Sbjct 6847 AAAGTGGGAGAACGTCATTTTATATCATACGTGTTAGCATTCTTCGCTGCAAGTGATGGA 6788 Query 43880 ATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGA 43939 || || ||| || || | || ||| |||||||| || | || |||| || Sbjct 6787 ATCGTTCTTGAGAACTTACTAGAACGTTTTAGTCAAGAAGTGCAGATCCCCGAAGTCCGT 6728 Query 43940 TGTTTTTATGGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTG 43999 ||||| ||||| | || || || || || ||||| || || ||||||||| | | Sbjct 6727 TGTTTCTATGGTATGCAGATAGCTATTGAGAATATACACTCCGAAATGTACTCCTTATTA 6668 Query 44000 ATAGATACGTACATCAAAGATGGGCACGAGAAGCATCGATTGTTTAATGCGAT-AGAAAC 44058 || || || || || | || | | |||| || | || ||||| || || ||| Sbjct 6667 ATCGACACATATATTAGGGACTCGAAAGAGAGAGATTTCCTTTTCAATGCAATAAGTAAC 6608 Query 44059 AGTACCTGCGATTAAACATAAAGCAGACTGGGCCCTTAAATGGAT---AAATTCAAATGA 44115 || | || | || || | ||||| || | ||||| |||| || Sbjct 6607 CTGGATTGTG-TTGCTAAGAAGGCTCAGTGGGCACTGGACTGGATCGGTGATTCTAAGTC 6549 Query 44116 TTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATC 44175 | | |||| |||||| || ||||| ||||||| || || || | || || || || Sbjct 6548 TACGTTTGCAGAACGTCTAGTCGCTTTTGCAGCAGTCGAGGGTGTGTTTTTCTCTGGTAG 6489 Query 44176 GTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAA 44235 |||||||| || |||||| ||||||| ||||| | ||||| ||| || | || || Sbjct 6488 TTTTGCGGCTATCTTTTGGCTAAAGAAGCGAGGACTTATGCCGGGGCTGTCATTCAGTAA 6429 Query 44236 TGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTGCTTGTTACTTGGATA 44295 ||| | ||||| | ||||| || || ||||| || || ||||| | | || | | Sbjct 6428 TGAACTCATAAGCAGAGATGAGGGATTGCATTGTGACTTCGCTTGTCTCCTGTTTAAACA 6369 Query 44296 TCTAGGAGACGATAAGCCTTCATGTAAGACAATTACAGAT-ATTGTTGTAGAGGCAGTAA 44354 || | || | |||||| | || ||| || | ||| | ||| || || Sbjct 6368 CATA-GTGA--AGAAGCCTCCTAAAGAGCGCATT-GAGTTGATTATGAAAGAAGCTGTCG 6313 Query 44355 AGATAGAACAAGAATTTATGACAACAGCATTACCTGTAAATTTAATAGGAATGAATGAAC 44414 ||||||||| | ||| || | ||| ||||||| | | |||||||||||| Sbjct 6312 TGATAGAACAGCAGTTTTTGTCGGAAGCTCTACCTGTTAGCCTGATAGGAATGAATTGCA 6253 Query 44415 TTTTGATGAACCAATATATTGAATACATTGCAGATCGTTTACTTTTGGAACTGGGTTGCG 44474 || ||| |||||| ||||| | ||| || ||||| | | | ||||| |||| | Sbjct 6252 AATTAATGTGCCAATACATTGAGTTCATCGCTGATCGACTGTTAGTTGAACTTGGTTATG 6193 Query 44475 ATAA----ACAC---------TATAT-------------TGTACAA-------AACCCGT 44501 | || | | ||||| | ||||| ||||| | Sbjct 6192 AAAAGGTGAGTCTGTCGTACTTATATAATTACATCTAGATATACAATTCGGACAACCCAT 6133 Query 44502 TTGATTTTATGGAAAATATTTCGTTGGAAGGCAAAACAAACTTTTTTGAAAAACGCGTTG 44561 | || |||||||||||||| || | ||||| || ||||| || ||||||||||| |||| Sbjct 6132 TCGACTTTATGGAAAATATATCAATAGAAGGAAAGACAAATTTCTTTGAAAAACGAGTTG 6073 Query 44562 GAGAATATCAGCGAATGGGCGTCATG 44587 | ||||| || || || |||||| Sbjct 6072 GCGAATACCAACGTGCTGGAGTCATG 6047 >seq3532 Length=21136 Score = 116 bits (128), Expect = 3e-21 Identities = 183/258 (71%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||||||||| | | || || || ||||| ||| || ||||| |||| || Sbjct 2422 AAACATGTTCGTGGTATCCTACTGTACGGTCCACCTGGTACGGGTAAAACGCTAATGGCA 2363 Query 19396 AGAGAACTTAGTAAATTACTTACAAAACAACCT---CCCAAAATTGTAAATGGTCCTGAA 19452 || || || ||||| | | ||| || | || |||||||| |||||||| Sbjct 2362 CGACAAATTGGTAAAATGTT---AAATGCACGTGAACCAAAAATTGTCAATGGTCCAAGT 2306 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || ||| |||| ||||| ||| |||| |||| ||| | || || || ||||| ||| Sbjct 2305 ATATTAGATAAGTATGTTGGTGAATCTGAAGCGAATATTCGTAAGTTATTCGCTGATGCT 2246 Query 19513 GAAGAAGAACAAAAACGTTTAGGGCGCAAAAGTT-CTTTGCACATTATAATACTAGATGA 19571 ||||| ||| | |||||| | ||| ||| | | ||||||| ||||| ||| | ||||| Sbjct 2245 GAAGATGAAGAGAAACGTAT-GGGTGCACATTCTGCTTTGCATATTATTATATTTGATGA 2187 Query 19572 ATTGGACGCAATCTGTAA 19589 | | || ||||||||||| Sbjct 2186 AATTGATGCAATCTGTAA 2169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396543541505845