Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq27942 132 4e-26 seq7169 87.8 2e-12 >seq27942 Length=6783 Score = 132 bits (146), Expect = 4e-26 Identities = 154/205 (75%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 27044 ATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCA-TGTTGCGCTCGTCTTCGAGCT 27102 |||||| || || ||||| ||||||||||| || || |||| || | ||||| |||| Sbjct 3788 ATGTAATGTCGACTCTTTCTGAATATTGTAATCCGACAGTGTT-CGTCCATCTTCAAGCT 3730 Query 27103 GTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCT 27162 ||||||||||| |||| |||||||||||||| || || | || || || || |||| Sbjct 3729 GTTTACCGGCGAAAATAAGACGCTGTTGATCTGGTGGTATGCCTTCCTTGTCTTGAATCT 3670 Query 27163 TGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCG 27222 | |||| | |||| ||||| | | ||||||||| || ||||| | ||| |||| Sbjct 3669 TAGCCTTCACTGCCTCTATGGTGTCAGCAGGTTCAACTTCAAGGGTTATGGTTTTCCCCG 3610 Query 27223 TCAGAGTTTTCACAAAGATTTGCAT 27247 | || ||||||||||| || ||||| Sbjct 3609 TTAGTGTTTTCACAAAAATCTGCAT 3585 >seq7169 Length=15740 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 108556 CAAGCGAACAAGCAATGTAATCCTTCGTCGCGACTTATGAGCTCGTTACTGAACGTCAAA 108615 |||||||| ||||| ||||| || || | |||||||| || |||||||| | || Sbjct 6384 CAAGCGAAGTCACAATGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGC 6443 Query 108616 CCCGGCATAATACCTTTCGTTTTAATGTAAAATATTGCCGCAAAACTGCCGGaaaaaaaT 108675 |||||||||| ||| | | || | |||| || ||||||||||| || || ||||| Sbjct 6444 CCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAAC 6503 Query 108676 ATTCCCTCGACAATTGCAAACGCAAC 108701 | |||||||| |||||| || || Sbjct 6504 ACACCCTCGACTGCTGCAAAAGCGAC 6529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423958858046328