Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq7169 194 1e-44 >seq7169 Length=15740 Score = 194 bits (214), Expect = 1e-44 Identities = 592/917 (65%), Gaps = 45/917 (5%) Strand=Plus/Plus Query 4259 TTGGTATTCGGATACTCGCTTTTCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTC 4318 |||||||||| ||||| ||||| |||||||| || || ||||||| || |||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 4319 CATAAAATCAAACGGATT-----AGTTGCGT-------TGTAATGTTTT----------- 4355 |||||| || || || || | ||| | |||||| | | Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 4356 --TCACACTTT--------AGAGCTACAAGCAATCGGTCAGCTACAAATTCTATATACTG 4405 |||| ||| || | || | || ||| ||||| | || || || || || Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 4406 GCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAAAACTC 4465 || ||| | || ||| || ||||| || | || |||||||| || | | |||||||| Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 4466 TTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGTTTATT 4525 |||||||| || |||||| | || || | || ||||||| || || || Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTCTTTAGGAGGCTTCTT 6361 Query 4526 TACTAAGTATCCAAACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCTGCTAAT 4585 |||| || | ||||| | ||| || || ||||||||||| || || |||||||| || Sbjct 6362 CACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCTTAT 6421 Query 4586 CAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAAATATAGC 4645 ||||| ||| || | | || ||||| | |||| ||| || |||||||| ||||| Sbjct 6422 GAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGATAGC 6481 Query 4646 GGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTACTAATCGGGACCC 4705 ||||| ||||| || || | || || || || ||||| || |||| || | Sbjct 6482 CGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTCTGC 6541 Query 4706 GAACGAGCTGGCTTTG--TCTTTAATCCATTTTAATGCCCAGTTAGCTTTTTTCTTAACG 4763 ||| | | ||| | || ||||| | | |||||| | ||| || || ||| Sbjct 6542 AAAC--GTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAACA 6599 Query 4764 CACGGAATTGTGTATATAGCGTTAAA----TAATTTACTTTTTTCAAATGGGTCTTGAAT 4819 || | | ||| || || || ||| | | |||| | ||| ||| Sbjct 6600 CAATCCAGGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTC----GAGTCCCTAAT 6655 Query 4820 ATAAGTGTCTATTAGTAGGCTATACATTTCAGAATGTATATTTTCTATAGCAATCTGAAA 4879 ||| ||||| |||| || | |||||||| || |||||||| || ||||| ||||| | Sbjct 6656 ATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCAT 6715 Query 4880 TCCGTAAAAGCATCTAGCTTCTGTTACTTGAACTTCGTTACAAAATCTTTCTACTAAGTT 4939 || || || || | |||| | | || ||||| | || ||| | ||||| |||||| Sbjct 6716 ACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAACGTTCTAGTAAGTT 6775 Query 4940 TTCGTTTACTATACCGTCACTGGCTGCAAAAAACGCCAAAACATGAGATATAAAGTACTG 4999 || || || || ||||| || || || || || || || | |||||||| | | Sbjct 6776 CTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACG 6835 Query 5000 TTCGTCAGGCTTAAGTTTTTTCCAGTGGGGCAAATCTTTAGTTAAATCAACTTCTTCAAC 5059 ||| | || || | ||| | || || || | |||||| |||||||| || Sbjct 6836 TTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCAC 6895 Query 5060 AGTCCAAAACGACGCTTCCGCTTTTTTGTACATAGACCAAATATCAGGATACTGAATCGG 5119 |||||| ||||| ||| | ||||| || || | ||||| ||| |||| || || || Sbjct 6896 AGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTGG 6955 Query 5120 AAGTATGACAAATCTGT 5136 | | ||||||| || Sbjct 6956 GAAAAGTACAAATCGGT 6972 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426069202081877