Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq7169 214 2e-50 seq28879 136 5e-27 >seq7169 Length=15740 Score = 214 bits (236), Expect = 2e-50 Identities = 607/934 (65%), Gaps = 44/934 (5%) Strand=Plus/Plus Query 47830 CTTGAGACATAACTCCCATTTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTT 47889 || ||||||| ||||| ||| ||||| || || ||||| || || ||||| || | Sbjct 6040 CTCGAGACATGACTCCAGCACGTTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCT 6099 Query 47890 TGCCTTCCAATGATATATTTTCCATAAAATCAAATGGATTAACTGCATTATA-------- 47941 | ||||| | |||||||||||||||||| || ||||| || | | ||| || Sbjct 6100 TTCCTTCTATTGATATATTTTCCATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGA 6159 Query 47942 ---AAtt----------------------tttttAAATCCTAATTCTGAAATCAGTCTAT 47976 |||| |||| | | || | ||| | ||||| || Sbjct 6160 TGTAATTATATAAGTACGACAGACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGAT 6219 Query 47977 CTGCAACGAATTCTATATATCTTTTCATCATTTCACAATTCATTCCTATAAGTTTAACTG 48036 | || | ||| || || ||| ||| | || |||||||||||||| || |||| | Sbjct 6220 CAGCGATGAACTCAATGTATTGGCACATTAATTTGCAATTCATTCCTATCAGGCTAACAG 6279 Query 48037 GTAGAGCCTCCGTAAGAAACTCTTGTTCGATAGTGACAGCATCCACTATTATCGATGTTA 48096 ||||||| |||| | ||||| ||||| || |||||| || || ||| | | Sbjct 6280 GTAGAGCTTCCGACAAAAACTGCTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAA 6339 Query 48097 CCGTTTCCTCACTTGGTGGATACAACAAA---TGTTTAAACATTAAACATGCAAAATCAC 48153 | ||| | || || | | || |||||||||| | ||| || || |||| Sbjct 6340 ---TGCGCTCTTTAGGAGGCTTCTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCAC 6396 Query 48154 AATGAAGACCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTC 48213 |||| | || |||||||| || || | ||| ||| |||| || || ||||| |||| Sbjct 6397 AATGCAATCCCTCATCTCTGCTTATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTC 6456 Query 48214 CACGTTTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGG 48273 | || || || |||||||| || ||||| ||| ||||| || || | || || || | Sbjct 6457 CTCGCTTCTTTAGCCAAAAGATAGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTG 6516 Query 48274 CCGCAAATGCGGTAAGTCTCTCTCCGTAACTGG-CTTCG--TTGTGTATCCACCGTTGTG 48330 | ||||| ||| || | ||| | | | | ||| | | ||||| ||| Sbjct 6517 CTGCAAAAGCGACTAGACGTTCTGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTG 6576 Query 48331 CCCAATCAGCCTTCTTCTTTACACAAGGCATTGTTTCT-ATAGCATTAAAGAGAAAGttt 48389 |||| | ||||||||| |||||| || ||| || || ||||| || || || | | Sbjct 6577 CCCACTGAGCCTTCTTAGCAACACAATCCAG-GTTACTTATTGCATTGAAAAGGAAATCT 6635 Query 48390 ttttCATTGCTATCTTTAACGTAAGTATCTATTAAAAGACTATACATTTCGGAGTGAATA 48449 | || || || ||| || || || ||||| | |||||||||||||| ||| Sbjct 6636 CTCTCTTTCGAGTCCCTAATATATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATA 6695 Query 48450 TTTTCAATTGCCATCTGAAATCCGTAAAAACATCTCGCTTCTGTGATCTGTACCTCCGTA 48509 || ||||| || ||||| | || || ||||| | |||| | |||||| || || | Sbjct 6696 TTCTCAATAGCTATCTGCATACCATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGA 6755 Query 48510 CAAAATCGTTCAGCCAAATTCTCATTTACTATTCCATCACTAGCAGCAAAAAATGCTAAT 48569 | ||| ||||| || |||||| || ||||||||||| ||||| || |||||||| Sbjct 6756 CTAAAACGTTCTAGTAAGTTCTCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAAC 6815 Query 48570 ACATGTTTAATAAAATATTTTTCGTTGGAAGTCAGTTTATTCCAGTCATTGATATCTTTT 48629 || | | ||||||| ||| | || | ||| ||| | || || Sbjct 6816 ACGTATGATATAAAATGACGTTCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTG 6875 Query 48630 GATATATCTACTTCTTCAGCTGTCCAAAATGATGCCTCTGCTTTTTTATACATATTCCAT 48689 |||| |||||||||||| | ||||| || ||||| | ||||| ||||| | | ||| Sbjct 6876 GATAAATCTACTTCTTCCACAGTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAA 6935 Query 48690 ATATCACTGTATTGGATTGGGAAAATAACAAATC 48723 | ||| ||||| |||||||||| ||||||| Sbjct 6936 ACATCGTGATATTGTATTGGGAAAAGTACAAATC 6969 >seq28879 Length=6601 Score = 136 bits (150), Expect = 5e-27 Identities = 183/255 (72%), Gaps = 0/255 (0%) Strand=Plus/Minus Query 78215 ACCGTTAGATGTTCCATTTGTTCCAGAAATATAACTTCCACTTGCGCGAATATTACTAAT 78274 ||| |||||| ||||| ||||||| |||||| | ||| |||||| ||| | Sbjct 3482 ACCATTAGATTCACCATTCGTTCCAGCTATATAAGTACCAAGACTGCGAATGTTATGCAC 3423 Query 78275 GGATATCCCTATTCCTCCTGCCATCTTAGATATTAGAGCGCAACGTTTCAATGTATCGTA 78334 | | ||||| || || || | |||||||| | ||| || ||| |||||||| || Sbjct 3422 GTTCAGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATA 3363 Query 78335 GATACCCTCTATACTGTCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATG 78394 || ||||| ||||| |||||| |||| ||| || || || || || | ||| | | Sbjct 3362 AATCCCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTT 3303 Query 78395 AACAGTTCCTGCATTAAATAATGTCGGAGATGCATGCGTAAACCATTTTTCAGAAAGTAG 78454 ||||| ||||| || | |||||||| |||||||||||||||||||| || | ||| Sbjct 3302 TGGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAG 3243 Query 78455 ATTGTATGTTTCAAT 78469 ||||||||| | ||| Sbjct 3242 ATTGTATGTCTAAAT 3228 Score = 114 bits (126), Expect = 2e-20 Identities = 213/313 (68%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 77898 TCTCTTTCATATTGAGTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCA 77957 |||| ||||||||| ||| || ||| || || || ||||| | || ||| || Sbjct 3897 TCTCGTTCATATTGTTCATAAAGAGCTTCGAACTCTTCACCCCATAGTTCTGGCAAACCT 3838 Query 77958 GGGCATTCATTTGGGCACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAG 78017 || ||||||| || |||||||| ||| | | | | | | ||| || ||| || Sbjct 3837 GGACATTCATGAGGATCCATCAATGTCCATTTATCGTTAGCTTCAACACGACGCATGAAA 3778 Query 78018 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCTGTA 78077 | ||||||||||||||||||| || | |||||| | || | ||||||| |||||| Sbjct 3777 ATGTCAGGTATCCATAGAGCAAAGAACAAATCTCGAGCTCGAACTTCTTCAGCGCCTGTA 3718 Query 78078 TTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATTGCC 78137 || || | || | ||||| | | ||| | |||||| ||||| | ||| || || Sbjct 3717 TTTTTGCGCATTTCTACAAACTGAAATACATCGGGATGCCAAGGTTCCAAATACATAGCA 3658 Query 78138 ATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTATTATAAACT 78197 | | || || ||||| || ||||| ||||| | ||| | || || || ||| | || Sbjct 3657 AATGCGCCTGGACGTTTGTTGCCTCCTTGATCAACATAGCGTGCAGTATTGTTAAATACG 3598 Query 78198 CTCAACATTGGAA 78210 | |||||| |||| Sbjct 3597 CGCAACATCGGAA 3585 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 693033124160160