Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq7169 215 7e-51 seq28879 132 7e-26 >seq7169 Length=15740 Score = 215 bits (238), Expect = 7e-51 Identities = 596/912 (65%), Gaps = 44/912 (5%) Strand=Plus/Plus Query 46341 TTGGTATTCACCTACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATTTTC 46400 ||||||||| || || ||||| || || ||||| || || ||||| | |||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 46401 CATAAAATCAAACGGATTAG----------TAAC--------ATTATA-AAtt------- 46434 |||||| || || || || || | |||||| || | Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 46435 -------tttttAAATCCTAATTCTGAAATCAGTCTATCTGCAACGAATTCTATATACGT 46487 |||| | | || | ||| | ||||| ||| || | ||| || || || Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 46488 TTTCATCATTTCACAATTCATTCCTATGAGTTTGACCGGTAGAGCCTCCGTAAGAAACTC 46547 ||| | || |||||||||||||| || | || |||||||| |||| | ||||| Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 46548 TTGTTCAATAGTGACAGCATCCGATATTATCGATGTTACTGTTTCCTCACTTGGTGGATG 46607 ||||| || |||||| || || ||| | | | || ||| | || || | Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAAC-TCAATGCG--CTCTTTAGGAGGCTT 6358 Query 46608 CATCAAA---TGTTTAAACATTAAACATGCAAAATCACAATGAAGGCCTTCATCTCTACT 46664 | ||| |||||||||| | ||| || || |||||||| | || |||||||| || Sbjct 6359 CTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCT 6418 Query 46665 AATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATAT 46724 || | ||| ||| |||| ||||| ||||| ||||| ||||| || |||||||| || Sbjct 6419 TATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGAT 6478 Query 46725 AGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTC 46784 |||||| ||| ||||| || || | || || || || || || ||||| || | || Sbjct 6479 AGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTC 6538 Query 46785 TCCGTAACTGGCATCATTATGA---ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTAC 46841 | | | | | | | || | ||||| | ||||| | |||||| || || Sbjct 6539 TGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAAC 6598 Query 46842 ACAAGGCATTGTTTCT-ATAGCATTAAAGAGAAAGtttttttCATCACTATCTTTAACAT 46900 |||| || ||| || || ||||| || || || | | | || | || ||| || Sbjct 6599 ACAATCCAG-GTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATAT 6657 Query 46901 ATGTATCTATTAAAAGACTATACATTTCTGAATGAATGTTTTCAATAGCCATCTGAAATC 46960 |||| || ||||| | |||||||| || || || || |||||||| ||||| | | Sbjct 6658 ATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATAC 6717 Query 46961 CGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAAAATCGTTCAGACAAATTCT 47020 | || ||||| | |||| | ||||| || ||| || ||| ||||| || |||| Sbjct 6718 CATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAACGTTCTAGTAAGTTCT 6777 Query 47021 CATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACATGTTTAATAAAATATTTTT 47080 || || ||||||||||| ||||| || ||||| || || | | ||||||| || Sbjct 6778 CAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACGTT 6837 Query 47081 CATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTG 47140 | | | || | ||| ||| | || || |||| |||||||||||| | | Sbjct 6838 CTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCACAG 6897 Query 47141 TCCAGAATGACGCCTCTGCTTTTTTATACATATTCCATATATCACGATATTGGATCGGAA 47200 ||||||| || || | ||||| ||||| | | ||| | ||| ||||||| || || | Sbjct 6898 TCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTGGGA 6957 Query 47201 AAATAACAAATC 47212 ||| ||||||| Sbjct 6958 AAAGTACAAATC 6969 >seq28879 Length=6601 Score = 132 bits (146), Expect = 7e-26 Identities = 217/313 (69%), Gaps = 0/313 (0%) Strand=Plus/Minus Query 76493 TCTCTTTCATATTGTGTATATAACCGTTCAAATTCATCTCCCCAAACATCATCCAAACCA 76552 |||| |||||||||| ||| | ||| || || || ||||| | || |||||| Sbjct 3897 TCTCGTTCATATTGTTCATAAAGAGCTTCGAACTCTTCACCCCATAGTTCTGGCAAACCT 3838 Query 76553 GGACATTCATTCGGACACATCAATGACCACTCACCATCTTCCTTAACCCGTTTCATAAAG 76612 |||||||||| ||| |||||||| ||| | | | | | | ||| || ||| || Sbjct 3837 GGACATTCATGAGGATCCATCAATGTCCATTTATCGTTAGCTTCAACACGACGCATGAAA 3778 Query 76613 AGATCAGGTATCCATAGAGCAATAAATAGATCTCGGGTTCTACGTTCTTCATTTCCTGTA 76672 | ||||||||||||||||||| || | |||||| | || | ||||||| |||||| Sbjct 3777 ATGTCAGGTATCCATAGAGCAAAGAACAAATCTCGAGCTCGAACTTCTTCAGCGCCTGTA 3718 Query 76673 TTCTTTTTAAGATCTAGGAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCGCC 76732 || || | |||| |||| | | ||| | |||||| ||||| | ||| || || Sbjct 3717 TTTTTGCGCATTTCTACAAACTGAAATACATCGGGATGCCAAGGTTCCAAATACATAGCA 3658 Query 76733 ATAACACCCGGTCGTTTATTACCTCCCTGATCTATATATCTGGCAGTGTTATTATAAACT 76792 | | || || ||||| || ||||| ||||| | ||| | ||||| || ||| | || Sbjct 3657 AATGCGCCTGGACGTTTGTTGCCTCCTTGATCAACATAGCGTGCAGTATTGTTAAATACG 3598 Query 76793 CTCAACATTGGAA 76805 | |||||| |||| Sbjct 3597 CGCAACATCGGAA 3585 Score = 129 bits (142), Expect = 8e-25 Identities = 181/254 (71%), Gaps = 0/254 (0%) Strand=Plus/Minus Query 76811 CCGTTAGATGTACCATTTGTTCCAGAAATATAACTTCCACATGCACGAATATTACTAATA 76870 || |||||| |||||| ||||||| |||||| | ||| ||||| ||| | Sbjct 3481 CCATTAGATTCACCATTCGTTCCAGCTATATAAGTACCAAGACTGCGAATGTTATGCACG 3422 Query 76871 GATAGGCCTATTCCTCCTGCCATTTTAGAGATTAGAGCACAGCGTTTCAATGTGTCATAG 76930 || ||||| || || || ||||||| || | |||||| ||| ||||| ||||| Sbjct 3421 TTCAGACCTATCCCACCAGCATTTTTAGATATGATAGCACATTCTTTTAATGTATCATAA 3362 Query 76931 ATGCCCTCTATACTATCATCCATCATGTTAAGAAGAAAACAGCTAGACATTTGATGATGA 76990 || ||||| |||||||||||| |||| ||| || || || || || | ||| | | Sbjct 3361 ATCCCCTCGATACTATCATCCTTCATTGTAATCAGGAAGCAACTTGAAAGTTGTGGTTTT 3302 Query 76991 ACAGTTCCTGCATTAAACAATGTAGGAGATGCATGAGTGAACCATTTTTCAGAAAGTAGA 77050 ||||| ||||| || | || ||||| ||||| || ||||||||||| || | |||| Sbjct 3301 GGTGTTCCAGCATTGAAAAGCGTCGGAGAAGCATGCGTAAACCATTTTTCTGACATTAGA 3242 Query 77051 TTGTATGTTTCAAT 77064 |||||||| | ||| Sbjct 3241 TTGTATGTCTAAAT 3228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 711255715750080