Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trichobilharzia_20regenti_20[genbank_20GCA_5F000950905.1_202014-09- 24] 188,369 sequences; 701,762,036 total letters Query= NC_032111.1 Length=163005 Score E Sequences producing significant alignments: (Bits) Value seq7169 215 5e-51 >seq7169 Length=15740 Score = 215 bits (238), Expect = 5e-51 Identities = 597/913 (65%), Gaps = 43/913 (5%) Strand=Plus/Plus Query 23220 TTGATATTCCCCAACACGTCTTTCGAAAAAATTTGTCTTACCCTCTAATGATATATTTTC 23279 ||| ||||| ||||| ||| |||| || ||||||||||| || |||| |||||||||||| Sbjct 6062 TTGGTATTCGCCAACTCGTTTTTCAAAGAAATTTGTCTTTCCTTCTATTGATATATTTTC 6121 Query 23280 CATAAAATCAAATGGAT-----------------TAGAAGT-ATTATATA---------- 23311 |||||| || ||||| | |||| || |||||||| Sbjct 6122 CATAAAGTCGAATGGGTTGTCCGAATTGTATATCTAGATGTAATTATATAAGTACGACAG 6181 Query 23312 ---CAGCTTTACATGA--TAATTCCTTTAAAAGCCTATCTGCTACAAATTCAATATATTG 23366 || |||| ||| | | ||| ||| || | ||| || | || ||||| ||||| Sbjct 6182 ACTCACCTTTTCATAACCAAGTTCAACTAACAGTCGATCAGCGATGAACTCAATGTATTG 6241 Query 23367 ACACATCAAATCATAGTTTATACCTATTAGTTTTACTGGAATCGCATCATATAAGAATAG 23426 ||||| || | | || || ||||| || | || || | || || | || || | Sbjct 6242 GCACATTAATTTGCAATTCATTCCTATCAGGCTAACAGGTAGAGCTTCCGACAAAAACTG 6301 Query 23427 TTTTTCAATGGAAACAGCATCTTTAATTATTTGAACAATAACTTCTTCACTAGGTGGATA 23486 | ||| || ||||| ||||| || || |||| |||| |||| || | Sbjct 6302 CTGTTCTATCACGACAGCTTCTTTCATAATCAACTCAATGCGCTCTT---TAGGAGGCTT 6358 Query 23487 TTT---TAAATACTTAAACAATAAACATGCAAAATCACAATGTAGGCCTTCATCCCTACT 23543 || || | ||||||| | ||| || || |||||||| | || ||||| || || Sbjct 6359 CTTCACTATGTGTTTAAACAGGAGACAAGCGAAGTCACAATGCAATCCCTCATCTCTGCT 6418 Query 23544 AATCAATTCATTAGAAAATGTTAATCCTGGCATTAATCCTCGTTTTTTAATCCAAAATAT 23603 || | ||||||| |||| | || ||||| | |||||| || || | |||||| || Sbjct 6419 TATGAGTTCATTACTGAATGACAGCCCCGGCATAAGTCCTCGCTTCTTTAGCCAAAAGAT 6478 Query 23604 TGCAGCAAATGATCCGGAAAAGAAAATACCCTCAACAGCCGCAAAGGCCACAAGACGTGT 23663 || ||||| || || || || | |||||| || || ||||| || || |||||| Sbjct 6479 AGCCGCAAAACTACCAGAGAAAAACACACCCTCGACTGCTGCAAAAGCGACTAGACGTTC 6538 Query 23664 ACCAAATGTTGCATTATAATCAGAAATCCAtttttttGTCCAATTAGCCTTCAATTTTAC 23723 |||| || | ||| ||||| ||||| | || ||| | ||||||| || Sbjct 6539 TGCAAACGTAGACTTAGAATCACCGATCCAGTCCAGTGCCCACTGAGCCTTCTTAGCAAC 6598 Query 23724 ACACTCAATTGTTTC-AATTGCTTTTAAGAGAAAAGTTTTTTCTTCATTATCTGTTATAT 23782 ||| || | ||| | ||||| || || || ||| | | |||| || | |||| Sbjct 6599 ACAATCCA-GGTTACTTATTGCATTGAAAAGGAAATCTCTCTCTTTCGAGTCCCTAATAT 6657 Query 23783 ATGTATCAATTAGTAAACTATACATTTCAGAATGAATATTTTCAATAGCAATCTGAAACC 23842 |||| || |||| ||| |||||||| || || ||||| |||||||| ||||| | | Sbjct 6658 ATGTGTCGATTAATAAGGAGTACATTTCGGAGTGTATATTCTCAATAGCTATCTGCATAC 6717 Query 23843 CATAAAAACATCTAGCTTCAGACAATTGAACATCATTA-AAAAATCTTTTAGCTAAATTT 23901 |||| ||||| | |||| | | || || || | | |||| || ||| ||| || Sbjct 6718 CATAGAAACAACGGACTTCGGGGATCTGCACTTCTTGACTAAAACGTTCTAG-TAAGTTC 6776 Query 23902 TCGTTAACAATACCATCACTAGCAGCAAAGAAAGCAAGAACATATTTTATAAAATGTCTT 23961 || ||| || |||||||| ||||| ||||| || | || ||| ||||||||| | | Sbjct 6777 TCAAGAACGATTCCATCACTTGCAGCGAAGAATGCTAACACGTATGATATAAAATGACGT 6836 Query 23962 TCATCAGTTGATAATTTTTTCCAATCATTAATATCTTTTGATAAATCAACTTCATCAACT 24021 || | | | | ||||||| | || || |||||||| ||||| || || Sbjct 6837 TCTCCCACTTTGAGGGAGTCCCAATCAACTAAGTCCTTGGATAAATCTACTTCTTCCACA 6896 Query 24022 GTCCAAAAACTTGCCAAGGCACGCTTATACATTAGCCAAATATCATTATGTTGTATTGGA 24081 ||||| || ||| | || |||||| | |||||| ||| | || ||||||||| Sbjct 6897 GTCCAGAACGATGCTACAGCTTTCTTATAAAACTGCCAAACATCGTGATATTGTATTGGG 6956 Query 24082 AATATTACGAATC 24094 || | ||| |||| Sbjct 6957 AAAAGTACAAATC 6969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 520260097836600