Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq3 221 1e-52 seq176 111 2e-19 seq61 100 3e-16 >seq3 Length=4565964 Score = 221 bits (244), Expect = 1e-52 Identities = 212/268 (79%), Gaps = 8/268 (3%) Strand=Plus/Minus Query 116632 GGACATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGA 116691 |||||| ||| ||||||||||||||||||||||| |||||||| || |||||||| || Sbjct 1995863 GGACATCTGGGAGATGTACAAAAAGGCCGAGGCGTCTTTCTGGACAGTAGAGGAGGTTGA 1995804 Query 116692 CCTGTCCAAGGACACGAGCG-ACTGGGA---GCGCTTGAACGACAACGAGCGCCATTTCA 116747 || |||||||| | | || ||||||| || | ||| || ||| || |||| Sbjct 1995803 TCTCTCCAAGGAT-CTACCGGACTGGGAAATGCTCAAGAAGGAG---GAGAAACACTTCA 1995748 Query 116748 TCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCG 116807 || ||| || |||||||| || |||||||| |||||||||||||| ||||| |||| | Sbjct 1995747 TCTCGCATGTCCTGGCCTTCTTTGCCGCCAGTGACGGCATCGTCAATGAGAACTTGGTGG 1995688 Query 116808 AGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCG 116867 |||| ||| ||||||||||||||| ||||||| || |||||||| ||||| ||||| | Sbjct 1995687 AGCGCTTCAGCCAGGAGGTGCAGGTGCCCGAGGCCCGCTGCTTCTATGGCTTCCAGATAG 1995628 Query 116868 CCATGGAGAACGTGCACTCGGAAATGTA 116895 |||| |||||| | ||||| || ||||| Sbjct 1995627 CCATCGAGAACATCCACTCAGAGATGTA 1995600 Score = 93.3 bits (102), Expect = 4e-14 Identities = 156/223 (70%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || || || ||||| |||| || || || ||||||| || ||||| ||| || Sbjct 1995002 TGTTCAATGCAATTGAGACTCTGCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTGAACT 1994943 Query 117006 GGATCGCCGGCAGAGAGG-CCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAG 117064 ||||| | | || | || ||| || ||| | | ||||||||||| ||||| ||| Sbjct 1994942 GGATCAACT-CGGACTCGACCACCTATGGGGAGAGGGTCGTGGCCTTCGCTGCCGTGGAG 1994884 Query 117065 GGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATG 117124 ||| | ||||| ||||| || || |||| || ||| | ||||| | || | ||| Sbjct 1994883 GGCATTTTCTTCTCGGGTTCATTTGCTTCCATCTTCTGGTTGAAGAAGAGGGGATTAATG 1994824 Query 117125 CCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGG 117167 | |||||||| || |||||||| ||| | | ||||||| Sbjct 1994823 CATGGCCTGACCTTTTCTAACGAGCTGATCAGCCGCGACGAGG 1994781 >seq176 Length=618158 Score = 111 bits (122), Expect = 2e-19 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| || ||||| || | |||||||| || || |||| || ||||| |||||||| Sbjct 484054 GACAAGGAAGGCATTCCGCCCGACCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGAG 484113 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| |||||||| ||||||||||||||||||||| |||| ||||| || ||| || Sbjct 484114 GACGGTCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 484173 Query 40903 CGCTTGAGGGGCGG 40916 | || ||||||| Sbjct 484174 AGGCTGCGGGGCGG 484187 >seq61 Length=1822817 Score = 100 bits (110), Expect = 3e-16 Identities = 103/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 116741 CATTTCATCAAGCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAAT 116800 ||||||||||||||| | ||||| || || || || || |||||||||||||| |||||| Sbjct 745759 CATTTCATCAAGCACATCCTGGCATTCTTTGCAGCAAGTGACGGCATCGTCAATGAGAAT 745818 Query 116801 CTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTT 116860 || || ||| | || | ||| || || ||| | | || || | || ||||| ||||| Sbjct 745819 CTAGTAGAGAGGTTTGGTCAAGAAGTTCAGATTCCTGAAGCAAGATGTTTCTATGGCTTC 745878 Query 116861 CAGATCGCCATGGAG 116875 || || || |||||| Sbjct 745879 CAAATGGCAATGGAG 745893 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515207832976400