Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq3 96.9 3e-15 seq31 93.3 4e-14 seq176 91.5 1e-13 >seq3 Length=4565964 Score = 96.9 bits (106), Expect = 3e-15 Identities = 179/263 (68%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 57567 GACATTTGGAACATGTACAAAAAGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGAC 57626 ||||| ||| | |||||||||||||| || || || || ||||| || || || || || Sbjct 1995862 GACATCTGGGAGATGTACAAAAAGGCCGAGGCGTCTTTCTGGACAGTAGAGGAGGTTGAT 1995803 Query 57627 CTGTCTAAGGATCTGAGCGATTGGGATTCCCTCAAAGAATCTGAGAGAAATTTTATTAAA 57686 || || |||||||| || ||||| ||||| | |||| | | || || Sbjct 1995802 CTCTCCAAGGATCTACCGGACTGGGAAATGCTCAAGAAGGAGGAGAAACACTTCATCTCG 1995743 Query 57687 CACGTGTTGGCGTTTTTCGCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGA 57746 || || |||| || || ||||| || || || || || ||||| ||||| || | Sbjct 1995742 CATGTCCTGGCCTTCTTTGCCGCCAGTGACGGCATCGTCAATGAGAACTTGGTGGAGCGC 1995683 Query 57747 TTTTCACAAGAAGTGCAAGTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATT 57806 || || || ||||| ||| | ||||| | ||||| || || || || | ||||| Sbjct 1995682 TTCAGCCAGGAGGTGCAGGTGCCCGAGGCCCGCTGCTTCTATGGCTTCCAGATAGCCATC 1995623 Query 57807 GAAAACGTGCATTCAGAAATGTA 57829 || ||| | || ||||| ||||| Sbjct 1995622 GAGAACATCCACTCAGAGATGTA 1995600 >seq31 Length=3510018 Score = 93.3 bits (102), Expect = 4e-14 Identities = 101/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 24097 TTTAGTCTCCTTGTGCAAATTAGACACGGCCAATCTAGCCGCAAGCAACGAATAGTCGGA 24156 ||| |||||||||||||||||||| ||||| | | ||||| || | | |||||||| Sbjct 1261573 TTTGGTCTCCTTGTGCAAATTAGAGACGGCGATGCGGGCCGCGAGGATGGCATAGTCGGG 1261514 Query 24157 ATGATCGATGGTCATGGCCGCTGCCGTCTCGGCGATTAGATTGTCCAATTCAGCGGTGGT 24216 ||| | | | ||||||| ||||| ||||| || || |||||| ||| ||||||| Sbjct 1261513 ATGCTTGGTCGTCATGGTGGCTGCTGTCTCTGCTGCGAGTGTGTCCAGTTCGACGGTGGT 1261454 Query 24217 CACGCCCGAATAGA 24230 |||||| | |||| Sbjct 1261453 CACGCCAGGGTAGA 1261440 Score = 82.4 bits (90), Expect = 7e-11 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 23600 GCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCAT 23659 ||||| | ||||| |||| || || ||||||||| ||| || || |||| |||||| Sbjct 1268620 GCTCGGATCTTGTGCACGTTGACGCCAATGCCTCCGGCCGTCTTGGAGATCAGCGCGCAC 1268561 Query 23660 TGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTC 23697 || ||||| ||||||||||| ||||| ||||| || || Sbjct 1268560 TGCTTCAGGGTGTCGTAGATCCCCTCAATGCTATCGTC 1268523 >seq176 Length=618158 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 31285 GGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGA 31344 ||||||||||||| | ||||||||||||||||| || || || || ||||| ||| |||| Sbjct 484053 GGACAAGGAAGGCATTCCGCCCGACCAGCAGCGGCTGATCTTTGCCGGCAAGCAGCTGGA 484112 Query 31345 AGACTCTATGACTATGAGCGATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||| | || || || || ||||| || || || || || || || ||||| || Sbjct 484113 GGACGGTCGCACCCTGTCTGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCT 484172 Query 31405 TAGACTGAGGGGCGG 31419 || ||| ||||||| Sbjct 484173 GAGGCTGCGGGGCGG 484187 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445756565278800