Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq3 116 5e-21 seq61 104 3e-17 >seq3 Length=4565964 Score = 116 bits (128), Expect = 5e-21 Identities = 160/223 (72%), Gaps = 3/223 (1%) Strand=Plus/Plus Query 33604 CCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGTCCGGGCATTAGGCCACGCTTTT 33663 ||||||| | || || | ||||||||||| || || || |||||| || | ||| | Sbjct 1994781 CCTCGTCGCGGCTGATCAGCTCGTTAGAAAAGGTCAGGCCATGCATTAATCCCCTCTTCT 1994840 Query 33664 TAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGCAAAGG 33723 | | ||| || |||||||| ||||| || || ||||| || || || || ||||| |||| Sbjct 1994841 TCAACCAGAAGATGGAAGCAAATGAACCCGAGAAGAAAATGCCCTCCACGGCAGCGAAGG 1994900 Query 33724 CAATAAGTCTCTCTCCATAACCGGCGCTGTC---ATGTATCCACTTTTGAGCCCAATCGG 33780 | | | ||||| ||||| || ||| | ||||| || |||||||||| | Sbjct 1994901 CCACGACCCTCTCCCCATAGGTGGTCGAGTCCGAGTTGATCCAGTTCAGAGCCCAATCTG 1994960 Query 33781 CCTTCTTTTTTACACAAGGCATCGTTTCTATGGCATTAAAGAG 33823 ||||||| || |||||||||| || || || ||||| || || Sbjct 1994961 CCTTCTTCTTAACACAAGGCAGAGTCTCAATTGCATTGAACAG 1995003 >seq61 Length=1822817 Score = 104 bits (114), Expect = 3e-17 Identities = 113/147 (77%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 33659 CTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAGATTCCTTCTACTGCAGC 33718 |||||| | ||||||||| | ||| || ||||| || |||||||| ||||| |||||||| Sbjct 748186 CTTTTTCAACCAAAATATTGCAGCAAACGATCCAGAGAAGAAGATGCCTTCCACTGCAGC 748127 Query 33719 AAAGGCAATAAGTCTCTCTCCATA---ACCGGCGCTGTCATGTATCCA-CTTTTGAGCCC 33774 ||| ||||| || ||||||||| | | | | || |||| ||||| | | || |||| Sbjct 748126 AAATGCAATGAGCCTCTCTCCAAATGTAGCTTCCTTGGCATGGATCCATCGTATG-GCCC 748068 Query 33775 AATCGGCCTTCTTTTTTACACAAGGCA 33801 | || || ||||| || ||||| |||| Sbjct 748067 AGTCTGCTTTCTTCTTGACACATGGCA 748041 Score = 91.5 bits (100), Expect = 2e-13 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 33894 TCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAA 33953 || || ||||| || || || ||||||||||| || || | |||||| |||||| || | Sbjct 745892 TCCATTGCCATTTGGAAGCCATAGAAACATCTTGCTTCAGGAATCTGAACTTCTTGACCA 745833 Query 33954 AATCGTTCTGCTAAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACA 34013 || | ||| ||| ||| ||||| || || || ||||| |||||||| || |||| | Sbjct 745832 AACCTCTCTACTAGATTCTCATTGACGATGCCGTCACTTGCTGCAAAGAATGCCAGGATG 745773 Query 34014 TGTTTTATAAAATATTTTTC 34033 || || || |||| || ||| Sbjct 745772 TGCTTGATGAAATGTTGTTC 745753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629803704649200