Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq3 113 1e-19 seq61 107 4e-18 >seq3 Length=4565964 Score = 113 bits (124), Expect = 1e-19 Identities = 187/268 (70%), Gaps = 4/268 (1%) Strand=Plus/Minus Query 268730 GATATATGGAGGATGTACAAACAGGCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGAT 268789 || || ||| |||||||||| |||||| || ||||| ||||| ||||| || || ||| Sbjct 1995862 GACATCTGGGAGATGTACAAAAAGGCCGAGGCGTCTTTCTGGACAGTAGAGGAGGTTGAT 1995803 Query 268790 CTGTCTTATGACTTAATAGATTGGAAAAATTTAAA--ACCAGAAGAAAGAAGATTTATAT 268847 || || | || || || ||| ||| | || | || ||||| | || || | Sbjct 1995802 CTCTCCAAGGATCTACCGGACTGGGAAATGCTCAAGAAGGAGGAGAAACAC--TTCATCT 1995745 Query 268848 CTTATATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGA 268907 | || | || || || ||||| | ||||| || ||||| || || || | || ||| Sbjct 1995744 CGCATGTCCTGGCCTTCTTTGCCGCCAGTGACGGCATCGTCAATGAGAACTTGGTGGAGC 1995685 Query 268908 AGTTCTGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTA 268967 ||| | || ||||| ||| | || || ||| | || || || || ||||||||||| | Sbjct 1995684 GCTTCAGCCAGGAGGTGCAGGTGCCCGAGGCCCGCTGCTTCTATGGCTTCCAGATAGCCA 1995625 Query 268968 TAGAAAATATTCATTCAGAGATGTACAG 268995 | || || || || |||||||||||||| Sbjct 1995624 TCGAGAACATCCACTCAGAGATGTACAG 1995597 Score = 86.0 bits (94), Expect = 1e-11 Identities = 138/195 (71%), Gaps = 5/195 (3%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAAAC---GA-TAGCGCGCCTTA 269124 ||||| | || || | || ||||||||||| ||||| ||| || | | | ||| | Sbjct 1994976 TGTGTTAAGAAGAAGGCAGATTGGGCTCTGAACTGGATCAACTCGGACTCGACCACCT-A 1994918 Query 269125 CGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGC 269184 || || ||| | || || || || || || || || || ||||| ||||| || ||||| Sbjct 1994917 TGGGGAGAGGGTCGTGGCCTTCGCTGCCGTGGAGGGCATTTTCTTCTCGGGTTCATTTGC 1994858 Query 269185 CGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATT 269244 | ||||| ||||||||||| || || | |||| || | || || |||||||| | Sbjct 1994857 TTCCATCTTCTGGTTGAAGAAGAGGGGATTAATGCATGGCCTGACCTTTTCTAACGAGCT 1994798 Query 269245 GATAAGCAGGGACGA 269259 ||| ||| | ||||| Sbjct 1994797 GATCAGCCGCGACGA 1994783 >seq61 Length=1822817 Score = 107 bits (118), Expect = 4e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 268853 ATTCTTGCGTTTTTTGCAGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTC 268912 || || || || ||||||| ||||| || ||||| || || ||||||||||||| ||| Sbjct 745774 ATCCTGGCATTCTTTGCAGCAAGTGACGGCATCGTCAATGAGAATCTAGTAGAGAGGTTT 745833 Query 268913 TGTCAAGAGGTACAGATTCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGA 268971 ||||||| || |||||||||||||| |||||||| || || ||||| || || || || Sbjct 745834 GGTCAAGAAGTTCAGATTCCTGAAGCAAGATGTTTCTATGGCTTCCAAATGGCAATGGA 745892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151372362204620