Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq40 203 5e-48 seq334 199 6e-47 seq11 179 6e-41 seq549 104 4e-18 seq508 102 1e-17 seq270 82.4 1e-11 >seq40 Length=2006373 Score = 203 bits (224), Expect = 5e-48 Identities = 205/267 (77%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 ||||||||||| || | ||| || || |||||||| |||||||||||||| || ||| Sbjct 400798 GCTAAGCGTCACCGTAAGGTTCTGCGTGACAACATCCAGGGAATCACCAAGCCCGCCATC 400739 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 || ||||||||||| |||||||| |||||||| ||||||| || |||| || |||| Sbjct 400738 CGCCGTCTGGCTCGCCGTGGTGGTGTCAAGCGAATCTCTGGTCTGATCTACGAGGAGACC 400679 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 |||| ||| ||||| | |||||| ||| ||| |||| |||||| || ||| |||| Sbjct 400678 CGTGGTGTCCTGAAGGTGTTCCTCGAGAACGTCATCCGTGATGCCGTCACCTACTGCGAG 400619 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 ||||| || | ||||| |||||| |||||||| | ||||| || ||||||| || ||| Sbjct 400618 CACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAACGCCAGGGC 400559 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTAA 16699 |||| | || || || || ||||| Sbjct 400558 CGTACCCTGTACGGATTCGGCGGTTAA 400532 >seq334 Length=199807 Score = 199 bits (220), Expect = 6e-47 Identities = 205/268 (76%), Gaps = 0/268 (0%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||||||||||| ||| || || |||||||| || ||||||||||| || || Sbjct 108510 CGCCAAGCGTCATCGCAAGGTTCTGCGTGACAACATCCAGGGTATCACCAAGCCTGCCAT 108451 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| ||||||||| ||||||| || | || || |||| Sbjct 108450 CCGCCGTCTTGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATTTACGAGGAGAC 108391 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||||| ||| ||||| | |||||| ||| || |||| |||||| || ||| ||| Sbjct 108390 TCGTGGTGTCCTGAAGGTGTTCCTCGAGAATGTCATCCGTGATGCCGTCACCTACTGCGA 108331 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 |||||| || | ||||| |||||| |||||||| | ||||| || ||||||| || || Sbjct 108330 GCACGCCAAGAGAAAGACCGTCACCGCCATGGATGTGGTCTACGCTCTGAAACGCCAGGG 108271 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 ||||| | || || || || ||||| Sbjct 108270 CCGTACTCTGTACGGATTCGGCGGTTAA 108243 >seq11 Length=3137503 Score = 179 bits (198), Expect = 6e-41 Identities = 187/243 (77%), Gaps = 2/243 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| |||| | |||| || || |||||||| |||||||||||||| || || Sbjct 1695323 GCCAAGCGTCACCGCA-AGGTCTTGCGTGACAACATCCAGGGAATCACCAAGCCGGCCAT 1695265 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| |||||||| ||||||||| ||||||| || |||| || |||| Sbjct 1695264 CCGCCGTCTTGCTCGCCGTGGTGGTGTCAAGCGTATCTCTGGTCTGATCTACGAGGAGAC 1695205 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| |||| | ||| | ||| | ||| || |||| ||| || | |||| ||| Sbjct 1695204 CCGTGGTGTTCTCAAGGTTTTCTTGGAGAATGTCATCCGTGACGCAGTGACCTATTGCGA 1695145 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | ||||| |||||| ||||||| | ||||| || |||||||| ||||| Sbjct 1695144 ACACGCCAAGAGAAAGACCGTCACCGCCATGGACGTGGTCTACGCCTTGAAACGCCAAGG 1695085 Query 16672 CCG 16674 ||| Sbjct 1695084 CCG 1695082 >seq549 Length=18085 Score = 104 bits (114), Expect = 4e-18 Identities = 158/221 (71%), Gaps = 3/221 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCA-TCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || ||||| || | | || || || || || | |||||| || ||||||||||| || || Sbjct 5569 GCCAAGCGCCACTGGAAGGTC-CTCCGTGACAGCATCCAGGGCATCACCAAGCCGGCCAT 5511 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||||| || || || || || ||||| ||||| |||| || | | || || || || Sbjct 5510 TCGTCGCCTCGCCCGCCGGGGAGGAGTGAAGCGCATCTCCGGTCTCATTTACGAGGAAAT 5451 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 |||| | ||||| ||||||| ||| ||| |||| ||||| | ||||| ||| Sbjct 5450 GCGTGGAGCCCTGAAGGTCTTCCTGGAGAACGTCATCCGCGATGCGGT-CACTACTGCGA 5392 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCT 16652 ||||| || | ||||||||||| ||||||| | |||| Sbjct 5391 ACACGCCAAGAGGAAGACTGTCACTGCCATGGACGTGGTCT 5351 >seq508 Length=26830 Score = 102 bits (112), Expect = 1e-17 Identities = 166/239 (69%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || || ||||| || || || | || Sbjct 5629 CTCCGTGACAACATCCAGGGCATCACCAAGCCGGCCATTCGTCGCCTTGCGCGCTGCGGA 5570 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 ||||| ||||| ||| ||| | | || || || | |||| || |||| ||||| Sbjct 5569 GGAGTGAAGCGCATCTTTGGTCTCATTTACGAGGAAACGCGTGGAGTCCTGAAAGTCTTC 5510 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 || ||| ||| |||| |||||| || ||| ||| ||||| || | ||||||||| Sbjct 5509 CTGGAGAACGTCATCCGTGATGCGGTCACCTACTGCGAACACGCCAAGAGGAAGACTGTC 5450 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| | | || || | || | ||||| || | | | || || ||||| Sbjct 5449 ACTGCCATGGACGTGGAGTACGCGCTCAAGAGACAAGGGCGGACGCTGTACGGCTTTGG 5391 >seq270 Length=338283 Score = 82.4 bits (90), Expect = 1e-11 Identities = 89/118 (75%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||| | ||||| | | |||||||| || || |||||||||||||||||||| ||| Sbjct 72241 GCAAAGAGACATCGTAAAGTCCTTCGAGACAATATTCAAGGAATCACCAAGCCAGCCATC 72182 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 ||| | |||| || || || ||||||||||| | || || | | || ||||||| Sbjct 72181 CGTAGATTGGCACGCCGGGGGGGAGTCAAGCGAATTTCAGGTCTAATTTACGAAGAGA 72124 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79073586248145