Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq3 140 6e-28 seq31 129 1e-24 >seq3 Length=4565964 Score = 140 bits (154), Expect = 6e-28 Identities = 167/225 (74%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| || || ||||| |||| || | ||||||||||| || ||||| || ||| Sbjct 1995003 CTGTTCAATGCAATTGAGACTCTGCCTTGTGTTAAGAAGAAGGCAGATTGGGCTCTGAAC 1994944 Query 42669 TGGATCGAGA--GTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCG 42726 |||||| | | | |||| || | || |||||| | || ||||| | ||||| | Sbjct 1994943 TGGATCAACTCGGACTCGACC--ACCTATGGGGAGAGGGTCGTGGCCTTCGCTGCCGTGG 1994886 Query 42727 AGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGA 42786 ||||||| ||||||||||| | || || |||||||||||| | ||| ||| || | | Sbjct 1994885 AGGGCATTTTCTTCTCGGGTTCATTTGCTTCCATCTTCTGGTTGAAGAAGAGGGGATTAA 1994826 Query 42787 TGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGG 42831 ||| || || ||||| || ||||| || |||||| | ||||||| Sbjct 1994825 TGCATGGCCTGACCTTTTCTAACGAGCTGATCAGCCGCGACGAGG 1994781 Score = 138 bits (152), Expect = 2e-27 Identities = 215/305 (70%), Gaps = 2/305 (1%) Strand=Plus/Minus Query 42295 AGGACATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTG 42354 ||||||||||| |||||||| ||||| || || |||||| | |||||| ||| Sbjct 1995864 AGGACATCTGGGAGATGTACAAAAAGGCCGAGGCGTCTTTCTGGACAGTAGAGGAGGTTG 1995805 Query 42355 ACCTGGCCAAGGACACGGCCGG-CTGGGAGTCACTGTCTGAGAACGAAAAGTTTTTCCTC 42413 | || ||||||| | |||| |||||| || || | || || ||| || Sbjct 1995804 ATCTCTCCAAGGAT-CTACCGGACTGGGAAATGCTCAAGAAGGAGGAGAAACACTTCATC 1995746 Query 42414 AAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACC 42473 | | ||||||||||| |||||| ||||||||| |||||||||||| ||| Sbjct 1995745 TCGCATGTCCTGGCCTTCTTTGCCGCCAGTGACGGCATCGTCAATGAGAACTTGGTGGAG 1995686 Query 42474 AGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCC 42533 | |||| | ||||||||| ||||| ||||||||||| ||||||||||||||| Sbjct 1995685 CGCTTCAGCCAGGAGGTGCAGGTGCCCGAGGCCCGCTGCTTCTATGGCTTCCAGATAGCC 1995626 Query 42534 ATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCC 42593 || |||||| | ||||| ||| ||||| | || || |||| ||||||| ||| || Sbjct 1995625 ATCGAGAACATCCACTCAGAGATGTACAGCTTGCTTATCGACACCTACATCCGGGACCCA 1995566 Query 42594 GTCGA 42598 | ||| Sbjct 1995565 GACGA 1995561 Score = 118 bits (130), Expect = 2e-21 Identities = 146/197 (74%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 42829 AGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCT 42888 |||||||||| | |||||||||||||| ||||| ||||| || |||||||| | Sbjct 1994120 AGGGGCTGCACTGTGACTTTGCCTGCCTTATGTTC---AGCCATCTGGTCCACAAGCCGT 1994064 Query 42889 CGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGAGAAGGAGTTCCTCA 42948 || ||||||| || ||||||||||| ||| || || ||||||| |||||||||| | Sbjct 1994063 CGGAGGAGCGCATCAAGGCCATCATCAGGGAAGCTGTCCTGATCGAGCAGGAGTTCCTGA 1994004 Query 42949 CGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAA--CCACGACCTCATGTGCAAGTACAT 43006 | | | |||||| ||||| | |||||||| ||||| |||||| ||||||| Sbjct 1994003 CAGACGCCCTGCCCTGCTCCCTCATTGGCATGAATGCCACG--CTCATGAAGCAGTACAT 1993946 Query 43007 CCAGTACGTCGCCGACC 43023 ||| || ||||||| Sbjct 1993945 AGAGTTTGTGGCCGACC 1993929 >seq31 Length=3510018 Score = 129 bits (142), Expect = 1e-24 Identities = 155/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Minus Query 244321 CCCCTTGCTGACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTT 244380 ||| |||||| | ||| ||||||||||||| |||||| || | || |||||| | Sbjct 1275642 CCCTTTGCTGGCCGGGGAGCCCTCGTAGGTCTCGTAGGGTCCCTGCTCCTTGGCCAGATC 1275583 Query 244381 ACAGCTCTCGTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCG 244440 ||||| | ||||||||||||||||||||||| |||||| |||| | | | Sbjct 1275582 GCAGCTTGCCCTCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTGAGCTTCTG 1275523 Query 244441 GGCCTTGCCGCAGGTGAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCAC 244500 ||||| | || ||||||| || |||| | ||||| |||||||||| |||||||| Sbjct 1275522 GGCCTCGGGGCTCTCAAAGGGGAAGCGCATCTTGATGAAAGCGTCGGCCAGGCCCTGCAC 1275463 Query 244501 GCCGATGCCGATGGGTCTGTGTCGCTTGTTG 244531 |||||||| ||||| | ||| ||| |||| Sbjct 1275462 CCCGATGCCAATGGGGCGGTGACGCCGGTTG 1275432 Score = 111 bits (122), Expect = 3e-19 Identities = 137/185 (74%), Gaps = 2/185 (1%) Strand=Plus/Minus Query 244970 GGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATC 245029 |||||||| || | ||| || | ||| || | | | |||||| ||||| || ||| Sbjct 1270029 GGGCACATCAGGCACCAGTCCTGGTCGTTCTCAATGCGCCTCATGAACAGGTCTGGTATC 1269970 Query 245030 CAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCT-CAG 245088 || ||||| | ||||||||| | || || |||||| ||| ||| ||||||| | ||| Sbjct 1269969 CACAGGGCGTAGAAGAGGTCACGGGCCCGCTGCTCTTCCTTGCCGTGGTTCTTCTTGCAG 1269910 Query 245089 CTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGG 245148 |||| || || |||| |||| ||||||||||||||| ||| || || | ||| ||||| Sbjct 1269909 -TCCAGGAAATCGAAGATGTCGGCGTGCCAGGGCTCCAGGTACACGGCAAAGGCCCCGGG 1269851 Query 245149 CCGCT 245153 |||| Sbjct 1269850 ACGCT 1269846 Score = 102 bits (112), Expect = 2e-16 Identities = 89/111 (80%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 244706 ACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTG 244765 ||||| || | | ||| ||| | || ||||| ||||| ||||||||||||||||||||| Sbjct 1271418 ACCTCATCTGGGCTGGAGTATTCGATGATCTCCGTGCACAGGTTACTGCACTTGATGGTG 1271359 Query 244766 CCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 ||||||| ||| || || |||| |||| ||||| || ||||| |||||| Sbjct 1271358 CCCAGGTTCTGCTGGTTACTCTTGCCGTTACAGGCATCTTTGTACAGCATG 1271308 Score = 98.7 bits (108), Expect = 2e-15 Identities = 89/112 (79%), Gaps = 0/112 (0%) Strand=Plus/Minus Query 244705 CACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGT 244764 |||||| || | | ||| ||| | | ||||| ||||| |||||||||||||||||||| Sbjct 1270742 CACCTCATCTGGGCTGGAGTATTCTATGATCTCCGTGCACAGGTTACTGCACTTGATGGT 1270683 Query 244765 GCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCTTGTAGAGCATG 244816 |||||||| ||| || || |||| |||| ||||| || ||||| |||||| Sbjct 1270682 GCCCAGGTTCTGCTGGTTACTCTTGCCGTTACAGGCATCTTTGTACAGCATG 1270631 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944318365516400