Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq61 122 1e-22 seq3 107 3e-18 >seq61 Length=1822817 Score = 122 bits (134), Expect = 1e-22 Identities = 117/147 (80%), Gaps = 5/147 (3%) Strand=Plus/Minus Query 39694 CTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGC 39753 |||||| | ||||||||| |||||||| |||||||| |||||||||||||| ||||| || Sbjct 748186 CTTTTTCAACCAAAATATTGCAGCAAACGATCCAGAGAAGAAGATGCCTTCCACTGCAGC 748127 Query 39754 AAATGCAACAAGTCTCTCTCCGTAACTTGTATCATT---ATGTATCCA-CTTCTGTGCCC 39809 |||||||| || |||||||| | | | || || ||| ||||| | | || |||| Sbjct 748126 AAATGCAATGAGCCTCTCTCCAAATGTAGCTTCCTTGGCATGGATCCATCGTATG-GCCC 748068 Query 39810 AATCAGCTTTCTTCTTTACACAAGGCA 39836 | || ||||||||||| ||||| |||| Sbjct 748067 AGTCTGCTTTCTTCTTGACACATGGCA 748041 Score = 87.8 bits (96), Expect = 2e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 39929 TCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAA 39988 || || ||||| || || || || |||||||||||||||| ||| || || ||| || | Sbjct 745892 TCCATTGCCATTTGGAAGCCATAGAAACATCTTGCTTCAGGAATCTGAACTTCTTGACCA 745833 Query 39989 AATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACA 40048 || || || | | ||| ||||| || || || ||||| || ||||| ||||||| | Sbjct 745832 AACCTCTCTACTAGATTCTCATTGACGATGCCGTCACTTGCTGCAAAGAATGCCAGGATG 745773 Query 40049 TGTTTAATAAAATATTTTTCA 40069 || || || |||| || |||| Sbjct 745772 TGCTTGATGAAATGTTGTTCA 745752 >seq3 Length=4565964 Score = 107 bits (118), Expect = 3e-18 Identities = 146/203 (72%), Gaps = 3/203 (1%) Strand=Plus/Plus Query 39659 TCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCA 39718 ||||||||||| || || ||| |||||| || | ||| || | ||| || |||| |||| Sbjct 1994801 TCGTTAGAAAAGGTCAGGCCATGCATTAATCCCCTCTTCTTCAACCAGAAGATGGAAGCA 1994860 Query 39719 AAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAA 39778 || || || || ||||| ||||| || || || || || || || | ||||| || || Sbjct 1994861 AATGAACCCGAGAAGAAAATGCCCTCCACGGCAGCGAAGGCCACGACCCTCTCCCCATAG 1994920 Query 39779 CTTGT---ATCATTATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGC 39835 | || || | ||||| ||| | |||||||| || |||||||| ||||||||| Sbjct 1994921 GTGGTCGAGTCCGAGTTGATCCAGTTCAGAGCCCAATCTGCCTTCTTCTTAACACAAGGC 1994980 Query 39836 ATTGTTTCTATAGCATTAAAGAG 39858 | || || || ||||| || || Sbjct 1994981 AGAGTCTCAATTGCATTGAACAG 1995003 Score = 102 bits (112), Expect = 1e-16 Identities = 193/284 (68%), Gaps = 0/284 (0%) Strand=Plus/Plus Query 39887 TATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAAT 39946 || || || || | || || ||||| ||||| |||||||| || || || ||||| || Sbjct 1995579 TAGGTGTCGATAAGCAAGCTGTACATCTCTGAGTGGATGTTCTCGATGGCTATCTGGAAG 1995638 Query 39947 CCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTT 40006 || || || || | || || | | || ||||| | || | ||| |||| || Sbjct 1995639 CCATAGAAGCAGCGGGCCTCGGGCACCTGCACCTCCTGGCTGAAGCGCTCCACCAAGTTC 1995698 Query 40007 TCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAATAAAATATTTT 40066 ||||| || || || ||||| |||||||| || |||| ||||| || || | ||| Sbjct 1995699 TCATTGACGATGCCGTCACTGGCGGCAAAGAAGGCCAGGACATGCGAGATGAAGTGTTTC 1995758 Query 40067 TCATCGGGTGTCAATTTATTCCAGTCATTGATATCTTTTGATATATCTACTTCTTCAGCT 40126 || || | | | | |||||| | ||| || || | ||| || || || || Sbjct 1995759 TCCTCCTTCTTGAGCATTTCCCAGTCCGGTAGATCCTTGGAGAGATCAACCTCCTCTACT 1995818 Query 40127 GTCCAAAACGACGCCTCTGCCTTTTTGTACATGTTCCATATATC 40170 ||||| || |||||||| |||||||||||||| | ||| || || Sbjct 1995819 GTCCAGAAAGACGCCTCGGCCTTTTTGTACATCTCCCAGATGTC 1995862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686893645074600