Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq3 104 2e-17 seq61 91.5 1e-13 >seq3 Length=4565964 Score = 104 bits (114), Expect = 2e-17 Identities = 198/290 (68%), Gaps = 4/290 (1%) Strand=Plus/Minus Query 43727 GACATATGGCAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGAT 43786 ||||| ||| | ||||||||||| || ||||||| || ||||||| ||| || |||||| Sbjct 1995862 GACATCTGGGAGATGTACAAAAAGGCCGAGGCGTCTTTCTGGACAGTAGAGGAGGTTGAT 1995803 Query 43787 TTGACTAAAGACTTAGCACATTGG--ATTGCATTAAAACCACAAGAAAAACATTTTATAT 43844 | | || || || | | ||| | ||| | || | || ||||| || || | Sbjct 1995802 CTCTCCAAGGATCTACCGGACTGGGAAATGC--TCAAGAAGGAGGAGAAACACTTCATCT 1995745 Query 43845 CTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTC 43904 | || |||| || ||||| || || ||||| || |||||||| || ||||| | Sbjct 1995744 CGCATGTCCTGGCCTTCTTTGCCGCCAGTGACGGCATCGTCAATGAGAACTTGGTGGAGC 1995685 Query 43905 GGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCA 43964 | || || || || || | || || || || || || ||||| || || || |||| Sbjct 1995684 GCTTCAGCCAGGAGGTGCAGGTGCCCGAGGCCCGCTGCTTCTATGGCTTCCAGATAGCCA 1995625 Query 43965 TAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATC 44014 | || || || || || || |||||||| | || || || || |||||| Sbjct 1995624 TCGAGAACATCCACTCAGAGATGTACAGCTTGCTTATCGACACCTACATC 1995575 >seq61 Length=1822817 Score = 91.5 bits (100), Expect = 1e-13 Identities = 102/135 (76%), Gaps = 5/135 (4%) Strand=Plus/Plus Query 44078 AAAGCAGACTGGGCCCTTAAATGGATAAATTCAAATGATTCT---TTTGGAGAACGACTT 44134 ||||||||||||||| | |||||| || | || || || |||||||| | || Sbjct 748058 AAAGCAGACTGGGCCATACGATGGATCCATGCCAAGGAAGCTACATTTGGAGAGAGGCTC 748117 Query 44135 GTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGG 44194 | || ||||| | ||||||||||| ||||| || ||||||||||| || ||||||||| Sbjct 748118 ATTGCATTTGCTGCAGTGGAAGGCATCTTCTTCTCTGGATCGTTTGCTGCAATATTTTGG 748177 Query 44195 TTAAAGAAACGAGGT 44209 || | ||| ||||| Sbjct 748178 TTGA--AAAAGAGGT 748190 Score = 82.4 bits (90), Expect = 6e-11 Identities = 87/115 (76%), Gaps = 0/115 (0%) Strand=Plus/Plus Query 43854 TGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTTGCGC 43913 |||| || ||||| || || ||||| || |||||||| ||| | || |||||| | Sbjct 745778 TGGCATTCTTTGCAGCAAGTGACGGCATCGTCAATGAGAATCTAGTAGAGAGGTTTGGTC 745837 Query 43914 AAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGA 43968 |||||||||| | || |||||| ||||||| ||||| || ||||| || || || Sbjct 745838 AAGAAGTTCAGATTCCTGAAGCAAGATGTTTCTATGGCTTCCAAATGGCAATGGA 745892 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397447450348825