Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq176 109 6e-19 seq31 96.9 4e-15 seq3 96.9 4e-15 >seq176 Length=618158 Score = 109 bits (120), Expect = 6e-19 Identities = 117/155 (75%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 ||| | ||||| || || ||||||||||| || ||||| || ||||||||||| || || Sbjct 484033 AATGTTAAGGCCAAGATCCAGGACAAGGAAGGCATTCCGCCCGACCAGCAGCGGCTGATC 484092 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 ||||| || ||||| || ||||| | ||| ||||| | ||||| || |||| ||||| Sbjct 484093 TTTGCCGGCAAGCAGCTGGAGGACGGTCGCACCCTGTCTGACTACAACATCCAGAAGGAG 484152 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 ||||| || || || || || | || || || || Sbjct 484153 TCCACCCTGCACCTGGTGCTGAGGCTGCGGGGCGG 484187 >seq31 Length=3510018 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 81179 CTGGGCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGA 81238 |||||| |||||| |||||||||||| |||||| ||||||||| | | |||||| Sbjct 1270043 CTGGGCTCTCGTTGGGGCACATCAGGCACCAGTCCTGGTCGTTCTCAATGCGCCTCATGA 1269984 Query 81239 AAGCGTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCT 81298 | ||| || ||||| |||||| ||| ||||| ||| ||| ||| || | || | Sbjct 1269983 ACAGGTCTGGTATCCACAGGGCGTAGAAGAGGTCACGGGCCCGCTGCTCTTCCTTGCCGT 1269924 Query 81299 GGTTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGG 81358 |||| | || || || || | |||||| || ||||| |||||||| ||||||| Sbjct 1269923 GGTTCTTCTTGCAGTCCAGGAAATCGAAGATGTCGGCGTGCCAGGGCTCCAGGTACACGG 1269864 Query 81359 C 81359 | Sbjct 1269863 C 1269863 Score = 82.4 bits (90), Expect = 9e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 80572 GCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCC 80631 ||||| || ||| || | |||||||| || |||| | ||||||||| || || || Sbjct 1275632 GCCGGGGAGCCCTCGTAGGTCTCGTAGGGTCCCTGCTCCTTGGCCAGATCGCAGCTTGCC 1275573 Query 80632 ATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGG 80691 | ||||| |||| || ||| |||||||| |||| | | |||| ||| Sbjct 1275572 CTCAGGGCGGCGTAGTAGATGGTCTCAAAGATCTGGATGTTGAGCTTCTGGGCCTCGGGG 1275513 Query 80692 TCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCG 80751 || || | |||| |||| | ||||| |||| ||||||||||| || |||||| | Sbjct 1275512 CTCTCAAAGGGGAAGCGCATCTTGATGAAAGCGTCGGCCAGGCCCTGCACCCCGATGCCA 1275453 Query 80752 ATCGGGCGGTGGCGC 80766 || |||||||| ||| Sbjct 1275452 ATGGGGCGGTGACGC 1275438 >seq3 Length=4565964 Score = 96.9 bits (106), Expect = 4e-15 Identities = 121/166 (73%), Gaps = 0/166 (0%) Strand=Plus/Minus Query 64321 TGGGAGCTTTACAAGAAAGCCATCGCAAGTTTCTGGACGGTCGAGGAGGTTGATCTCGCC 64380 |||||| | ||||| || ||| || ||||||||| || ||||||||||||||| || Sbjct 1995856 TGGGAGATGTACAAAAAGGCCGAGGCGTCTTTCTGGACAGTAGAGGAGGTTGATCTCTCC 1995797 Query 64381 AAGGATCTCAGCGACTGGGAAAACCTAAACTCACAGGAACAGCACTTCATCAAGTTGGTC 64440 |||||||| |||||||||| || || |||| | ||||||||| | ||| Sbjct 1995796 AAGGATCTACCGGACTGGGAAATGCTCAAGAAGGAGGAGAAACACTTCATCTCGCATGTC 1995737 Query 64441 CTAGCATTCTTCGCATCAAGTGACGGAATTGTGTTTGAGAATTTGG 64486 || || ||||| || | |||||||| || || |||||| |||| Sbjct 1995736 CTGGCCTTCTTTGCCGCCAGTGACGGCATCGTCAATGAGAACTTGG 1995691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570297817526800