Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq61 111 2e-19 seq3 84.2 3e-11 >seq61 Length=1822817 Score = 111 bits (122), Expect = 2e-19 Identities = 112/145 (77%), Gaps = 3/145 (2%) Strand=Plus/Minus Query 48219 TTTTTGAGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCA 48278 ||||| | |||||||||||| || || |||||||| ||||| |||||||| || || ||| Sbjct 748185 TTTTTCAACCAAAATATTGCAGCAAACGATCCAGAGAAGAAGATGCCTTCCACTGCAGCA 748126 Query 48279 AATGCGGTAAGTCTCTCTCCGTAACTGGCTTCGTTG---TGTATCCACCGTTGTGCCCAA 48335 ||||| | || |||||||| | | ||||| ||| || ||||| ||| ||||| Sbjct 748125 AATGCAATGAGCCTCTCTCCAAATGTAGCTTCCTTGGCATGGATCCATCGTATGGCCCAG 748066 Query 48336 TCAGCCTTCTTCTTTACACAAGGCA 48360 || || |||||||| ||||| |||| Sbjct 748065 TCTGCTTTCTTCTTGACACATGGCA 748041 >seq3 Length=4565964 Score = 84.2 bits (92), Expect = 3e-11 Identities = 145/208 (70%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 48183 TCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTGAGCCAAAATATTGCCGCG 48242 ||||||||||| || || || |||||| ||| | || || | ||| || || | || Sbjct 1994801 TCGTTAGAAAAGGTCAGGCCATGCATTAATCCCCTCTTCTTCAACCAGAAGATGGAAGCA 1994860 Query 48243 AAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCGGTAAGTCTCTCTCCGTAA 48302 || || || || ||||| ||||| || ||||| || || || | ||||| || || Sbjct 1994861 AATGAACCCGAGAAGAAAATGCCCTCCACGGCAGCGAAGGCCACGACCCTCTCCCCATAG 1994920 Query 48303 CTG---GCTTCGTTGTGTATCCACCGTT--GTGCCCAATCAGCCTTCTTCTTTACACAAG 48357 || | || || ||||| ||| | |||||||| ||||||||||| ||||||| Sbjct 1994921 GTGGTCGAGTCCGAGTTGATCCA--GTTCAGAGCCCAATCTGCCTTCTTCTTAACACAAG 1994978 Query 48358 GCATTGTTTCTATAGCATTAAAGAGAAA 48385 ||| || || || ||||| || || || Sbjct 1994979 GCAGAGTCTCAATTGCATTGAACAGGAA 1995006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694653473869600