Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthaster_20planci_20[genbank_20GCA_5F001949145.1_202016-12-20] 1,765 sequences; 383,843,944 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq3 102 1e-16 seq61 87.8 3e-12 >seq3 Length=4565964 Score = 102 bits (112), Expect = 1e-16 Identities = 149/208 (72%), Gaps = 7/208 (3%) Strand=Plus/Plus Query 46672 TCGTTAGAAAATGTGAGCCCAGGCATTAGTCCACGCTTTTTGAGCCAAAATATAGCCGCG 46731 ||||||||||| || || ||| |||||| ||| | ||| || | ||| || || | || Sbjct 1994801 TCGTTAGAAAAGGTCAGGCCATGCATTAATCCCCTCTTCTTCAACCAGAAGATGGAAGCA 1994860 Query 46732 AAAGATCCAGAAAAGAATATGCCTTCTACAGCCGCGAATGCGACAAGTCTCTCTCCGTAA 46791 || || || || ||||| ||||| || || || ||||| || || | ||||| || || Sbjct 1994861 AATGAACCCGAGAAGAAAATGCCCTCCACGGCAGCGAAGGCCACGACCCTCTCCCCATAG 1994920 Query 46792 CTGGCATC-ATTATGA----ATCCACCTTTGAGCCCAATCAGCCTTTTTCTTTACACAAG 46846 ||| || | | || ||||| | |||||||||| ||||| ||||| ||||||| Sbjct 1994921 GTGG--TCGAGTCCGAGTTGATCCAGTTCAGAGCCCAATCTGCCTTCTTCTTAACACAAG 1994978 Query 46847 GCATTGTTTCTATAGCATTAAAGAGAAA 46874 ||| || || || ||||| || || || Sbjct 1994979 GCAGAGTCTCAATTGCATTGAACAGGAA 1995006 >seq61 Length=1822817 Score = 87.8 bits (96), Expect = 3e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 46942 TCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTACAA 47001 || || ||||| || || || || |||||||||||||||| |||||| || ||| || | Sbjct 745892 TCCATTGCCATTTGGAAGCCATAGAAACATCTTGCTTCAGGAATCTGAACTTCTTGACCA 745833 Query 47002 AATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAATACA 47061 || | || | ||||||||| || || || ||||| || ||||| ||||||| | Sbjct 745832 AACCTCTCTACTAGATTCTCATTGACGATGCCGTCACTTGCTGCAAAGAATGCCAGGATG 745773 Query 47062 TGTTTAATAAAATATTTTTCA 47082 || || || |||| || |||| Sbjct 745772 TGCTTGATGAAATGTTGTTCA 745752 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712918670884800