Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq283 140 4e-28 >seq283 Length=477172 Score = 140 bits (154), Expect = 4e-28 Identities = 215/303 (71%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 54262 CCCGGAGATATAGCTTCCACTGGCACGAATATTAC-TA-ATTGATAGACCTATCCCCCCT 54319 ||||| || ||||||||| ||| ||||| || || ||| | |||| || || || Sbjct 155800 CCCGGCTATGTAGCTTCCAGAGGCTCGAATGTTGTGTACATTCA--GACCAATTCCACCA 155857 Query 54320 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 54379 || ||| || ||| ||||||| | | || || ||||| || || || || |||||| Sbjct 155858 GCTGATTTGGAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATACCATCAATGCTATCA 155917 Query 54380 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 54439 || |||| | || || |||||||| |||| ||| | | ||||| | |||||| Sbjct 155918 TCTGACATGGTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCACGTTCCAGAATTAAAC 155977 Query 54440 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCGATAGCT 54499 | ||||| ||||| || || |||||||| || || | || || || ||||| || || Sbjct 155978 AGAGTAGGCGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTATAAGTCTCAATGGCC 156037 Query 54500 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 54559 | | || || ||||||||||| |||| ||||||||| |||||||| || |||| | Sbjct 156038 GCTTTGATGTCATGATGATGAATTCCCACTGAGACACGCATCAACATGTGTTGGGGTCGT 156097 Query 54560 TCA 54562 ||| Sbjct 156098 TCA 156100 Score = 107 bits (118), Expect = 2e-18 Identities = 130/177 (73%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 54086 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 54145 |||||||| || ||||| || || || | || ||||| | | |||||| ||||| Sbjct 155176 TGTTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCAT 155235 Query 54146 GGTTCCAAGTATATGGTCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 54205 ||||||| ||| || | | | ||||| || |||||||||||||| || | |||||| Sbjct 155236 GGTTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTT 155295 Query 54206 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGCACCATTGGTC 54262 || || ||| ||||| | |||||| || |||| |||||| || | ||||||||| Sbjct 155296 GCAGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGTC 155352 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 53149 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 53208 ||| || || || ||||| | ||| | || |||| || ||||| || || ||||| | Sbjct 150737 TACCTGGAACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAA 150796 Query 53209 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 53268 |||||||||||||| | ||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 150797 GGACTCATTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAG 150856 Query 53269 ACTATTTCT 53277 ||| ||||| Sbjct 150857 ACTGTTTCT 150865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593703632500080