Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq37 131 2e-25 >seq37 Length=1179958 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| || || ||||||||||| | || || ||| | | | Sbjct 896370 ATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC 896311 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 ||||| | | | | ||| ||| |||| |||||||| || ||||| | ||||| Sbjct 896310 GACAGTATCGAGAATGTTAAGACAAAGATTCAGGACAAAGAAGGTATCCCTCCCGACCAA 896251 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||| | || | ||| ||||| || |||| |||| || ||| | | |||||||||| Sbjct 896250 CAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAAC 896191 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||||||| ||| | || || |||||||| | || ||||| || || Sbjct 896190 ATCCAGAAAGAGTCGACCCTTCATCTAGTCCTTCGTTTGAGAGGTGG 896144 Score = 123 bits (136), Expect = 3e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| ||||| || ||||| ||||||||||| | || || ||| | | Sbjct 896143 AATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAG 896084 Query 40749 CGACAGC-GTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || ||||| | ||| ||| |||| |||||||| |||||||| | || | Sbjct 896083 CGACTCCATTGAAAACG-TGAAGACAAAGATTCAGGACAAAGAAGGCATCCCGCCCGATC 896025 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | || | ||| || || || |||| || | || || || | |||||||| Sbjct 896024 AGCAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACA 895965 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 | || || ||||| | || || |||||||| ||||| || | |||||| Sbjct 895964 ATATTCAAAAGGAATCGACACTTCATCTAGTTTTGCGTTTACGTGGCGGC 895915 Score = 113 bits (124), Expect = 5e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||||||||| || || || ||||||||||| | || ||||| | | Sbjct 895914 ATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAGT 895855 Query 40750 GACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | ||||| | ||| ||| || | |||||||| || || || | ||||| Sbjct 895854 GACTCTATTGAAAACG-TGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACCA 895796 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || || ||||||| ||| || || || || || || | || ||||| | ||| || || Sbjct 895795 ACAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAA 895736 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||| || |||| || || || |||||||| Sbjct 895735 CATCCAGAAAGAATCCACCCTTCACCTGGTGTTGCG 895700 Score = 102 bits (112), Expect = 8e-17 Identities = 161/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| || || | || || |||||||| ||| | || || ||| ||| | Sbjct 895457 ATGCAAATCTTCGTCAAGACATTGACTGGAAAAACCATTACCCTGGAAGTGGAACCCAGC 895398 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 ||| | | | |||| | || ||| |||| || |||||||| ||||| | || || Sbjct 895397 GACTCCATCGAGAACG-TGAAAACAAAGATTCAAGATAAAGAGGGAATCCCACCAGATCA 895339 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| | || || | ||| || ||||| || || || | || ||||| | ||||||||| Sbjct 895338 GCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 895279 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 ||| || ||||| |||| || || | || | ||| |||| || || Sbjct 895278 CATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGG 895231 Score = 86.0 bits (94), Expect = 6e-12 Identities = 157/229 (69%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTC-GTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCA 40747 |||||| || || || ||||| || || || ||||||||||| |||| || ||| | | Sbjct 895687 AATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAA 895628 Query 40748 CCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | | | || || || | |||||||| || ||||| | || | Sbjct 895627 GCGACTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATC 895568 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| | || || | ||| || ||||| || || || | || ||||| | |||||||| Sbjct 895567 AGCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACA 895508 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 |||| || ||||| |||| || || | || | ||| |||| || || Sbjct 895507 ACATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGG 895459 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515203608178960