Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq37 122 1e-22 >seq37 Length=1179958 Score = 122 bits (134), Expect = 1e-22 Identities = 167/232 (72%), Gaps = 1/232 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTA-TAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAA 124596 |||||| || ||| | || || || || || ||||| || ||| | || ||||| ||| Sbjct 895687 AATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAA 895628 Query 124597 ATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || | || ||| | ||| ||| || ||||| |||||||| || |||||||||| Sbjct 895627 GCGACTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATC 895568 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || ||||| ||||| || ||||||||| | || ||| | ||||| | || || | Sbjct 895567 AGCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACA 895508 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 | |||||||| ||||| ||| | || |||||| | || | |||||||||| Sbjct 895507 ACATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGGTAT 895456 Score = 113 bits (124), Expect = 7e-20 Identities = 165/231 (71%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | |||||| | || || ||||| || || | || | ||| | | Sbjct 895457 ATGCAAATCTTCGTCAAGACATTGACTGGAAAAACCATTACCCTGGAAGTGGAACCCAGC 895398 Query 124599 GATACAATTTCTAATTT-AAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | || || | |||||| || |||||||||||||| || || ||||| ||||| Sbjct 895397 GACTCCATCGAGAACGTGAAAACA-AAGATTCAAGATAAAGAGGGAATCCCACCAGATCA 895339 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || ||||| ||||| || ||||||||| | || ||| | ||||| | || || || Sbjct 895338 GCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACAA 895279 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| | || |||||| | || | |||||||||| Sbjct 895278 CATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGGTAT 895228 Score = 100 bits (110), Expect = 4e-16 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 124623 AAAATTCAAGATAAAGAAGGTATACCACCTGATCAACAAAGGCTTATTTTTGCAGGAAAA 124682 ||||||||||| || || || || ||||| ||||| || ||||||||||| |||||||| Sbjct 895145 AAAATTCAAGACAAGGAGGGAATCCCACCAGATCAGCAGAGGCTTATTTTCGCAGGAAAG 895086 Query 124683 CAATTAGAGGATAGTCGAACATTAGAAGATTATAATATTCAAAAAGAATCAACTTTGCAT 124742 || || || ||| | || || || ||||| || |||||||| || || ||| | ||| Sbjct 895085 CAGTTGGAAGATGGCCGTACCTTGAGCGATTACAACATTCAAAAGGAGTCTACTCTTCAT 895026 Query 124743 TTGGTTTTACGTTTACGAGGTGG 124765 | || || ||| | || ||||| Sbjct 895025 CTTGTGTTGCGTCTGCGCGGTGG 895003 Score = 100 bits (110), Expect = 4e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || || | || || || || || ||||| || ||| | || ||||| ||| Sbjct 896143 AATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAG 896084 Query 124598 TGATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATC 124656 || | ||| || | || ||| || ||||| || |||||||| || || || |||| Sbjct 896083 CGACTCCATTGAAAACGTGAAGACA-AAGATTCAGGACAAAGAAGGCATCCCGCCCGATC 896025 Query 124657 AACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATA 124716 | || || | ||||| || || || ||||| || ||| | ||||| | || || | Sbjct 896024 AGCAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACA 895965 Query 124717 ATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||||| ||||| || | ||| | ||||| |||||||| || || || Sbjct 895964 ATATTCAAAAGGAATCGACACTTCATCTAGTTTTGCGTTTACGTGGCGGCAT 895913 Score = 89.7 bits (98), Expect = 8e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || ||||| ||||| || ||| | ||| ||||| ||| Sbjct 896370 ATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC 896311 Query 124599 GATACAATTTCTAAT-TTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | || ||| |||| ||| || ||||| || ||||||||||| || || || || Sbjct 896310 GACAGTATCGAGAATGTTAAGACA-AAGATTCAGGACAAAGAAGGTATCCCTCCCGACCA 896252 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | | ||||| || || || ||||| || || | || || || || || || Sbjct 896251 ACAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAA 896192 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || ||||| || || | ||| | || | ||||| ||||||| || Sbjct 896191 CATCCAGAAAGAGTCGACCCTTCATCTAGTCCTTCGTTTGAGAGGTGGAAT 896141 Score = 86.0 bits (94), Expect = 9e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || |||| || || ||||| ||||| || || | || | || | | | Sbjct 895914 ATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAGT 895855 Query 124599 GATACAATTTCTAATTTAAA-ACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || | ||| || | || ||| || || ||||| ||||||||||| || || || || Sbjct 895854 GACTCTATTGAAAACGTGAAGACA-AAGATCCAAGACAAAGAAGGTATTCCTCCCGACCA 895796 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || || || || ||||| ||| | || ||| | ||||| | |||||||| Sbjct 895795 ACAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAA 895736 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || |||||||| || | || |||| || ||| | || ||||| || Sbjct 895735 CATCCAGAAAGAATCCACCCTTCACCTGGTGTTGCGTCTTCGTGGTGGAAT 895685 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755433138012800