Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq151 111 2e-19 seq323 109 6e-19 seq83 104 3e-17 seq37 104 3e-17 seq915 100 3e-16 seq292 98.7 1e-15 >seq151 Length=696129 Score = 111 bits (122), Expect = 2e-19 Identities = 76/85 (89%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 60057 AAAAATTTT---CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACA 60113 |||||| || |||| |||| ||||||||||||| ||||||||||||||||||||| | Sbjct 241036 AAAAATGTTGGCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGA 241095 Query 60114 TACTCACCACTATACTACCGAGGAT 60138 ||||||||||||||||||||||||| Sbjct 241096 TACTCACCACTATACTACCGAGGAT 241120 >seq323 Length=434814 Score = 109 bits (120), Expect = 6e-19 Identities = 68/73 (93%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| ||||||||||||| ||||||||||||||||||||| |||||||||||| Sbjct 289694 TCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACT 289635 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 289634 ATACTACCGAGGA 289622 >seq83 Length=889590 Score = 104 bits (114), Expect = 3e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| | ||||||||||| Sbjct 223978 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGACACTCACCACTA 223919 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 223918 TACTACCGAGGA 223907 >seq37 Length=1179958 Score = 104 bits (114), Expect = 3e-17 Identities = 165/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 42951 TATTGTCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAA 43010 || ||||| || | | ||||||||| | ||| | || |||||||||||| |||||| Sbjct 894997 TACTGTCCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAA 895056 Query 43011 TCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCG 43070 || || || || | || || | |||||| || ||||| || || | |||||| || Sbjct 895057 TCGCTCAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCT 895116 Query 43071 GCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGA 43129 | || | | |||||||| | ||| |||| | ||| | || | | | |||||| | Sbjct 895117 GGTGGGATTCCCTCCTTGT-CTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGG 895175 Query 43130 TTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 |||||| || | ||| ||||| || || || | ||||| || ||||||||||| Sbjct 895176 TTCCACTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 104 bits (114), Expect = 3e-17 Identities = 162/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || || | ||||||||| || | ||| | ||| ||||||||||||||||| || | Sbjct 895916 CCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTC 895975 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || | ||||| || ||||| || | |||||||| |||| ||| Sbjct 895976 AGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGG 896035 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCAC 43135 | || || |||||| ||| | ||||| || | | | | | |||||| | ||| || Sbjct 896036 ATGCCTTCTTTGTCC-TGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAAC 896094 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 || | ||||||||||| ||||| || || || || || || |||||| Sbjct 896095 TTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 ||| ||||| ||||| | || | ||| | || ||| || || || ||||| || Sbjct 896143 TCCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCT 896202 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 || || || |||| || | ||||| |||||||| || | |||||| ||||||| || Sbjct 896203 CAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGG 896262 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCA 43134 | | || |||||| ||| | ||||| | | | | | | | ||||||| | ||| | Sbjct 896263 GATACCTTCTTTGTCC-TGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAA 896321 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| || || |||||||| || ||||| ||||| Sbjct 896322 CCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 84.2 bits (92), Expect = 3e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 42957 CCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCC 43016 || ||||| | || | ||||| || | ||| ||||||||||| ||||| || | Sbjct 895231 CCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTC 895290 Query 43017 AGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGC 43076 || || || | || || || || || || ||||| || || | |||||| || | || Sbjct 895291 AGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGG 895350 Query 43077 ACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT-CGCCACCGTGTCGCTCGATTCCAC 43135 | | ||| || || ||| | ||||||| ||| | | | | |||||| | |||||| Sbjct 895351 ATTCCCTCTTTATCT-TGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCAC 895409 Query 43136 ATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || | || |||||||| || || | ||||| || ||||||||||| Sbjct 895410 TTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 >seq915 Length=125912 Score = 100 bits (110), Expect = 3e-16 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| |||| |||||| |||||| ||||||||||||||||||||| ||||| |||||| Sbjct 84643 TCTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 84702 Query 60125 ATACTACCGAGGA 60137 ||||||||||||| Sbjct 84703 ATACTACCGAGGA 84715 Score = 89.7 bits (98), Expect = 6e-13 Identities = 55/59 (93%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 60079 AATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTATACTACCGAGGA 60137 ||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 83285 AATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTCACCACTATACTACCGAGGA 83343 >seq292 Length=469541 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 347042 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 347101 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 347102 TACTACCGAGGA 347113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 348914 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 348973 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 348974 TACTACCGAGGA 348985 Score = 98.7 bits (108), Expect = 1e-15 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| |||||| |||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 350786 CTCCCCGGCGGGGAATTGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 350845 Query 60126 TACTACCGAGGA 60137 |||||||||||| Sbjct 350846 TACTACCGAGGA 350857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571800295369880