Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq37 102 5e-17 >seq37 Length=1179958 Score = 102 bits (112), Expect = 5e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 |||||||| |||||||||||| || |||| |||| ||||| |||||||| |||||| Sbjct 896180 TCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAA 896239 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || | ||||| |||||| || | | || ||||| |||||| ||| | || Sbjct 896240 ATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTC 896299 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || ||| | | ||| || || | ||||||||||| || || || || ||||| Sbjct 896300 TCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACG 896359 Query 34379 AAGATCTGCAT 34389 ||||||||||| Sbjct 896360 AAGATCTGCAT 896370 Score = 100 bits (110), Expect = 2e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| |||||||| | || ||| || || | |||| || || || |||||||| ||| Sbjct 895002 TCCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCT 895061 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || |||| | || ||||||||||| ||||||||||| |||| |||||| || || Sbjct 895062 CAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGG 895121 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGA 34340 | | ||||||||| || ||| | ||| | || | || || ||| | | ||| | Sbjct 895122 GATTCCCTCCTTGTCTTGAAT-TTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCA 895180 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | |||| ||| ||||| || || || | || || || ||||| ||||| Sbjct 895181 CTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 98.7 bits (108), Expect = 6e-16 Identities = 137/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||| || || || ||||||||| |||| ||| | || ||||| ||||| || ||||| Sbjct 895951 TTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAA 896010 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||| | ||||||||| ||| || | || || ||||| |||||| ||| | | Sbjct 896011 AATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGAATCTTTGTCTTCACGTT 896070 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | || || ||| | | ||| || |||| ||||||||||| || || || ||||| || Sbjct 896071 TTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGAC 896130 Query 34378 AAAGATCTGCAT 34389 || |||||||| Sbjct 896131 GAAAATCTGCAT 896142 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || ||||||||| | || ||||||||| ||||| || ||| Sbjct 895687 TCCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCT 895746 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 ||| ||| | || || | ||||| || ||||| ||||| ||||| |||||| || Sbjct 895747 CAGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGG 895806 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| |||||| ||| | | | || || || ||| ||||| Sbjct 895807 AATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGAC 895866 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | |||||||||||| || || || ||||| || || |||||||| Sbjct 895867 TTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323062467457760