Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq37 114 1e-20 >seq37 Length=1179958 Score = 114 bits (126), Expect = 1e-20 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||||||| || ||| ||||| ||||||||||||||| || Sbjct 895231 CCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTC 895290 Query 45170 AG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || | ||| ||| ||| ||||||||||||||||| |||| || ||| || || || Sbjct 895291 AGGGTTCGGCCATCTTCG---AGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGT 895347 Query 45227 GGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCC 45286 || | ||||| || || ||| ||| || || | | | | ||| | ||| Sbjct 895348 GGGATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCC 895407 Query 45287 ACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 || |||| |||||| || || || |||| ||||| || ||||||||||| Sbjct 895408 ACTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 114 bits (126), Expect = 1e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 ||||||||||| | | || | || || || ||| ||||| |||||||||||| || Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 45170 AGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGC 45229 | || |||| |||| ||| || || ||||| || || ||||||||||||||||| Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 45230 ACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACC 45289 | ||| || |||||| ||| ||| |||||| | | | ||||| | || ||| Sbjct 896264 ATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACC 896323 Query 45290 TCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTG 45340 || | || || || || || || || |||||||| ||||| |||||| || Sbjct 896324 TCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCATGATG 896374 Score = 91.5 bits (100), Expect = 1e-13 Identities = 103/137 (75%), Gaps = 6/137 (4%) Strand=Plus/Plus Query 45110 CCACCTCTCAATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTC 45169 |||||||||| | | |||||||| || ||| ||||| ||||||||||||||| || Sbjct 895459 CCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTC 895518 Query 45170 AG---TTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGA 45226 || | ||| ||| ||| ||||||||||||||||| |||| || ||| || || || Sbjct 895519 AGGGTTCGGCCATCTTCG---AGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGT 895575 Query 45227 GGCACACCCTCCTTGTC 45243 || | || || ||||| Sbjct 895576 GGGATTCCTTCTTTGTC 895592 Score = 84.2 bits (92), Expect = 2e-11 Identities = 133/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 45146 TCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAAT 45205 ||||| ||||| ||||||||| |||| || | || |||| ||| || |||||||| Sbjct 895952 TCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAA 896011 Query 45206 ATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGCC 45265 ||||||||||| || ||||| || | || || |||||| ||| ||| ||| || Sbjct 896012 ATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGAATCTTTGTCTTCACGTTT 896071 Query 45266 GCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCACA 45325 | | | ||| | || || |||| || || || || |||||||| || || || Sbjct 896072 TCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACG 896131 Query 45326 AAGATTTGCAT 45336 || || ||||| Sbjct 896132 AAAATCTGCAT 896142 Score = 82.4 bits (90), Expect = 6e-11 Identities = 92/122 (75%), Gaps = 6/122 (5%) Strand=Plus/Plus Query 45125 AATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAG---TTGGCGATCG 45181 || |||| ||| || ||| || ||||| ||||| || ||| |||| | ||| ||| Sbjct 895703 AACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCATCT 895762 Query 45182 TCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTG 45241 ||| ||||| ||||||||||| || | ||||||||||||||||| | ||| || ||| Sbjct 895763 TCG---AGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTG 895819 Query 45242 TC 45243 || Sbjct 895820 TC 895821 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 395063542935841