Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq37 89.7 4e-13 >seq37 Length=1179958 Score = 89.7 bits (98), Expect = 4e-13 Identities = 150/215 (70%), Gaps = 4/215 (2%) Strand=Plus/Plus Query 18113 AAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATC 18172 ||| |||| |||||| || ||||| |||||||||||||||||| || ||| | ||| Sbjct 895245 AAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATC 895304 Query 18173 TTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATC 18232 ||| | |||||| || || | || || || || ||||| || | || || ||||| Sbjct 895305 TTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATC 895364 Query 18233 GGCAA--TTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 || |||||| || || | | | | ||| | ||| || ||| | ||| ||| Sbjct 895365 TTGAATCTTTGTT--TTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATG 895422 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 |||| || |||||||| || || || |||||||| Sbjct 895423 GTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 84.2 bits (92), Expect = 2e-11 Identities = 141/204 (69%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 18123 TGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGT 18182 |||||||| ||||| |||||||| ||||||||| || ||| | |||||||||||| Sbjct 895940 TGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATCTTCCAATTGC 895999 Query 18183 TTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGT 18242 || || || | || | | || ||||| || | |||||| || || ||| | | Sbjct 896000 TTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGAATCTTT 896059 Query 18243 TGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTC 18302 ||| || | | ||| | ||| | || || ||| | |||||| |||| || ||| Sbjct 896060 GTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAGAGTGATGGTTTTTCCCGTC 896119 Query 18303 AATGTTTTTACAAAAATTTGCATT 18326 | ||||| || ||||| |||||| Sbjct 896120 AGGGTTTTGACGAAAATCTGCATT 896143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379332807099645