Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq283 149 8e-31 seq4 91.5 2e-13 >seq283 Length=477172 Score = 149 bits (164), Expect = 8e-31 Identities = 221/310 (71%), Gaps = 4/310 (1%) Strand=Plus/Plus Query 63501 CCGGAGATATAGCCTCCACTGGCACGAATATTAC-TA-ATTGATAGACCTATTCCCCCTG 63558 |||| || |||| |||| ||| ||||| || || ||| | |||| ||||| || | Sbjct 155801 CCGGCTATGTAGCTTCCAGAGGCTCGAATGTTGTGTACATTCA--GACCAATTCCACCAG 155858 Query 63559 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCAT 63618 | ||| || ||| ||||||| | | || || ||||| || || || |||||||||| Sbjct 155859 CTGATTTGGAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATACCATCAATGCTATCAT 155918 Query 63619 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATA 63678 | |||| | || || |||||||| |||| ||| | ||||| | |||||| | Sbjct 155919 CTGACATGGTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCACGTTCCAGAATTAAACA 155978 Query 63679 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63738 ||||| ||||| || || |||||||| || || | || || || |||||||| || | Sbjct 155979 GAGTAGGCGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTATAAGTCTCAATGGCCG 156038 Query 63739 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63798 | || || ||||||||||| |||| ||||||||| |||||||| || |||| || Sbjct 156039 CTTTGATGTCATGATGATGAATTCCCACTGAGACACGCATCAACATGTGTTGGGGTCGTT 156098 Query 63799 CAACAATTTT 63808 || ||| ||| Sbjct 156099 CAGCAACTTT 156108 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63324 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63383 |||||||| || ||||| || || || | || ||||| | | |||||| ||||| Sbjct 155176 TGTTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCAT 155235 Query 63384 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63443 ||||||| ||| || || | | ||||| || |||||||||||||| || | |||||| Sbjct 155236 GGTTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTT 155295 Query 63444 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63499 || || ||| ||||| | |||||| || |||| ||| || || | |||||||| Sbjct 155296 GCAGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGT 155351 Score = 98.7 bits (108), Expect = 1e-15 Identities = 99/129 (77%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62387 TACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62446 ||| ||||| || ||||| | ||| | || |||| || ||||| || || ||||| | Sbjct 150737 TACCTGGAACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAA 150796 Query 62447 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62506 |||||||||||||| | ||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 150797 GGACTCATTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAG 150856 Query 62507 ACTATTTCT 62515 ||| ||||| Sbjct 150857 ACTGTTTCT 150865 >seq4 Length=2104981 Score = 91.5 bits (100), Expect = 2e-13 Identities = 86/110 (78%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 33275 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33334 |||||| || || |||||||| || | || | ||| || || || || ||||| || Sbjct 1669503 AGACATCACACCAGCCTTTTGGTACTCTGCAACTCTTTTCTCAAAGAAGTTTGTTTTCCC 1669444 Query 33335 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTGTAAA 33384 ||||||||| || ||||||||||| ||||| ||||| | ||||||||||| Sbjct 1669443 TTCCAATGAGATGTTTTCCATGAAGTCAAATGGATTCGGAACATTGTAAA 1669394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629798540144880