Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq283 145 1e-29 >seq283 Length=477172 Score = 145 bits (160), Expect = 1e-29 Identities = 216/303 (71%), Gaps = 4/303 (1%) Strand=Plus/Plus Query 66293 CCCGGAGATATAGCTTCCACTTGCACGAATATTAC-TA-ATTGATAGACCTATTCCCCCT 66350 ||||| || ||||||||| || ||||| || || ||| | |||| ||||| || Sbjct 155800 CCCGGCTATGTAGCTTCCAGAGGCTCGAATGTTGTGTACATTCA--GACCAATTCCACCA 155857 Query 66351 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCA 66410 || ||| || ||| ||||||| | | || || ||||| || || || || |||||| Sbjct 155858 GCTGATTTGGAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATACCATCAATGCTATCA 155917 Query 66411 TCCATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 66470 || |||| | || || |||||||| |||| ||| | | ||||| | |||||| Sbjct 155918 TCTGACATGGTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCACGTTCCAGAATTAAAC 155977 Query 66471 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCT 66530 | ||||| ||||| || || |||||||| || || | || || || |||||||| || Sbjct 155978 AGAGTAGGCGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTATAAGTCTCAATGGCC 156037 Query 66531 GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTT 66590 | | || || ||||||||||| |||| ||||||||| |||||||| || |||| | Sbjct 156038 GCTTTGATGTCATGATGATGAATTCCCACTGAGACACGCATCAACATGTGTTGGGGTCGT 156097 Query 66591 TCA 66593 ||| Sbjct 156098 TCA 156100 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 66117 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCAC 66176 |||||||| || ||||| || || || | || ||||| | | |||||| ||||| Sbjct 155176 TGTTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCAT 155235 Query 66177 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 66236 ||||||| ||| || || | | ||||| || |||||||||||||| || | |||||| Sbjct 155236 GGTTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTT 155295 Query 66237 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 66293 || || ||| ||||| | |||||| || |||| |||||| || || ||||||||| Sbjct 155296 GCAGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGTC 155352 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 65180 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 65239 ||| || || || ||||| | ||| | || |||| || ||||| || || ||||| | Sbjct 150737 TACCTGGAACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAA 150796 Query 65240 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 65299 |||||||||||||| | ||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 150797 GGACTCATTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAG 150856 Query 65300 ACTATTTCT 65308 ||| ||||| Sbjct 150857 ACTGTTTCT 150865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658152882045640