Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq37 116 4e-21 >seq37 Length=1179958 Score = 116 bits (128), Expect = 4e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | |||||| || | ||||| || || ||||| || ||||||||||||||| Sbjct 895688 CCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTC 895747 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||||| || || || || |||| ||||| || || |||||||| Sbjct 895748 AGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGA 895807 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||||||||| ||| ||| || | | ||| | | ||| | ||||| || Sbjct 895808 ATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACT 895867 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | || || || |||| ||||||||||| || ||||| Sbjct 895868 TCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 113 bits (124), Expect = 4e-20 Identities = 164/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139537 GCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCT 139596 |||||| |||||||||||||||| |||| || || || |||||||| || || ||||| Sbjct 895915 GCCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCT 895974 Query 139597 CATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 || || | ||||| | || || || || | |||| || ||||||||||| || Sbjct 895975 CAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGG 896034 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTGT-TTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 |||||||||||||| ||| | ||||| || | | ||| | | |||| | || || | Sbjct 896035 GATGCCTTCTTTGTC-CTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAA 896093 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 | || | || | || || || |||| ||||| ||||| || ||||| Sbjct 896094 CTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 109 bits (120), Expect = 5e-19 Identities = 165/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 || || || || | |||||| || | |||| |||||||| ||||||||||| |||||| Sbjct 895000 TGTCCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCG 895059 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| || | ||||| | ||| || || || | || || | |||||||| || Sbjct 895060 CTCAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGT 895119 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTC 139713 || || || || ||||| ||| |||| ||||| | | || | | |||| |||| || Sbjct 895120 GGGATTCCCTCCTTGTC-TTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTC 895178 Query 139714 CACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| || | || | ||||| || ||||| || || ||||| ||||||||| Sbjct 895179 CACTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCATA 895230 Score = 109 bits (120), Expect = 5e-19 Identities = 153/212 (72%), Gaps = 2/212 (1%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || || || ||||||||||| || ||||||| || | ||||| Sbjct 895248 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895307 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| ||||| || || | ||||| | |||||||| || || || || ||||| || | Sbjct 895308 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATC-TT 895366 Query 139675 GATTTTTTGTTTT-AGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCT 139733 || | |||||||| | | || | | |||| |||| ||||| || | ||| | || | Sbjct 895367 GAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGGTTT 895426 Query 139734 TGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 | || ||||| || || ||||| ||||||||| Sbjct 895427 TTCCAGTCAATGTCTTGACGAAGATTTGCATA 895458 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/228 (70%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| ||||| | |||| |||| || |||||||| || ||||| || |||||| Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || | |||||| | || || ||||| | || | || || || |||||||| Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGC-TGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| | ||||| ||| | | || | ||||| | || || || Sbjct 896264 ATACCTTCTTTGTC-CTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAAC 896322 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 ||||| || | || || || || | ||| || ||||| || ||||| Sbjct 896323 CTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 139555 AACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTC 139614 ||| ||||||| || || || ||||||||||| || ||||||| || | ||||| Sbjct 895476 AACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTC 895535 Query 139615 GAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGT 139674 ||| ||||| || || | ||||| | |||||||| || || || ||||||||||| Sbjct 895536 GAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTG 895595 Query 139675 GATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTT 139734 ||| || ||| | | || | | |||| | || || || || | || | || || Sbjct 895596 GATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTT 895655 Query 139735 GCCGGTCAACGTTTTTAC-GAATATTTGCAT 139764 ||||||| ||||| || || || ||||| Sbjct 895656 TCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496048987863200