Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq283 161 1e-34 seq4 86.0 9e-12 >seq283 Length=477172 Score = 161 bits (178), Expect = 1e-34 Identities = 239/335 (71%), Gaps = 4/335 (1%) Strand=Plus/Plus Query 80172 CCCGGAGATATAGCTTCCACTGGCACGAATATTAC-TA-ATTGATAGACCTATTCCCCCT 80229 ||||| || ||||||||| ||| ||||| || || ||| | |||| ||||| || Sbjct 155800 CCCGGCTATGTAGCTTCCAGAGGCTCGAATGTTGTGTACATTCA--GACCAATTCCACCA 155857 Query 80230 GCCATTTTAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCA 80289 || ||| || ||| ||||||| | | || || ||||| || || || ||||||||| Sbjct 155858 GCTGATTTGGAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATACCATCAATGCTATCA 155917 Query 80290 TCAATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAAT 80349 || |||| | || || |||||||| |||| ||| | | ||||| | |||||| Sbjct 155918 TCTGACATGGTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCACGTTCCAGAATTAAAC 155977 Query 80350 AAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCT 80409 | ||||| ||||| || || |||||||| || |||| || || || |||||||| || Sbjct 155978 AGAGTAGGCGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTATAAGTCTCAATGGCC 156037 Query 80410 GATTCTATATCCCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTT 80469 | || || || ||||||||||| || | ||||||||| |||||||| || |||| | Sbjct 156038 GCTTTGATGTCATGATGATGAATTCCCACTGAGACACGCATCAACATGTGTTGGGGTCGT 156097 Query 80470 TCAACGATCTTGTTATTTATTTTCAACAAGTAAGA 80504 ||| | | || ||| || |||| | |||||| Sbjct 156098 TCAGCAACTTTCCCATTGATCTTCAGTAGGTAAGA 156132 Score = 113 bits (124), Expect = 6e-20 Identities = 131/177 (74%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 79996 TGCTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 80055 || ||||| || ||||| || || || | || ||||| | | |||||| ||||| Sbjct 155176 TGTTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCAT 155235 Query 80056 GGTTCCAAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTA 80115 ||||||| ||| || || | | || ||||| |||||||||||||| || | |||||| Sbjct 155236 GGTTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTT 155295 Query 80116 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 80172 || || ||| ||||| | |||||| || |||| |||||| || || ||||||||| Sbjct 155296 GCAGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGTC 155352 Score = 93.3 bits (102), Expect = 6e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 79059 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCAC 79118 ||| || || || ||||| | ||| | || |||| || ||||| || || ||||| | Sbjct 150737 TACCTGGAACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAA 150796 Query 79119 CGATTCATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAA 79178 || ||||||||||| | ||| || ||||| ||||| |||||||| ||||| ||||| | Sbjct 150797 GGACTCATTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAG 150856 Query 79179 ACTATTTCT 79187 ||| ||||| Sbjct 150857 ACTGTTTCT 150865 >seq4 Length=2104981 Score = 86.0 bits (94), Expect = 9e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 49653 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 49712 |||||| || || |||||||| || | || | ||| || || || || ||||| || Sbjct 1669503 AGACATCACACCAGCCTTTTGGTACTCTGCAACTCTTTTCTCAAAGAAGTTTGTTTTCCC 1669444 Query 49713 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAA 49762 ||||||||| || ||||||||||| ||||| ||||| | |||||| |||| Sbjct 1669443 TTCCAATGAGATGTTTTCCATGAAGTCAAATGGATTCGGAACATTGTAAA 1669394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718247063390440