Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq37 87.8 1e-12 >seq37 Length=1179958 Score = 87.8 bits (96), Expect = 1e-12 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 42918 CTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAA 42977 ||| || || | ||||| ||| ||| ||||| |||| |||||||| ||||| || || Sbjct 896179 CTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAA 896238 Query 42978 AATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTGATCAACTCT---TTGAC 43034 ||| ||||||||||| |||| || | ||||||||| || |||| | || | || || Sbjct 896239 AATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTC-CTGA--ATCTTTGTCTTAAC 896295 Query 43035 TCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTT 43094 | | | |||||| | || || || | || || |||||||| || || || || Sbjct 896296 ATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTT 896355 Query 43095 CACAAAAATTTGCAT 43109 ||| || || ||||| Sbjct 896356 CACGAAGATCTGCAT 896370 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 42901 ACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCGTCGTCC 42960 ||||| || | |||| |||||||| | ||||| ||| || || || | || || Sbjct 895477 ACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCTTCG 895536 Query 42961 AATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTTTCGCTG 43020 | |||||| ||||| ||||||| | ||| ||||| | || | |||||||| || | Sbjct 895537 AGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCTTGG 895596 Query 43021 ATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTATAGTTTTT 43080 ||| | ||| || | | | | ||||| | || || || | || || |||||| Sbjct 895597 ATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTTTTT 895656 Query 43081 CCGGTTAGAGTTTTCAC-AAAAATTTGCATT 43110 ||||| || |||||||| |||||| |||||| Sbjct 895657 CCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381358347332418