Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_005038.1 Length=99657 Score E Sequences producing significant alignments: (Bits) Value seq37 123 2e-23 >seq37 Length=1179958 Score = 123 bits (136), Expect = 2e-23 Identities = 175/242 (72%), Gaps = 12/242 (5%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || ||||| | ||| ||||| || | ||| | |||||| || ||||| ||||| Sbjct 895906 AATCTGCATGCCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATT 895965 Query 33193 GTAATCAGACAAATTGAGTTGG----TCATCCAATTGCTTTCCACTAAATATTAAACGTT 33248 ||| || || | ||| | || ||||||||||| || || || || || | Sbjct 895966 GTAGTCGCTCA----GCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCT 896021 Query 33249 GCTGGTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTG 33307 |||| || | || ||||||||||| || |||| ||| || || ||| ||| | | Sbjct 896022 GCTGATCGGGCGGGATGCCTTCTTTGTCCTGAATC-TTTGTCTTCACGTTTTCAATGGAG 896080 Query 33308 TCGTTGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGC 33367 ||| | |||| ||| |||||||| || ||||||||||| || ||||| |||||||| ||| Sbjct 896081 TCGCTTGGTTCAACTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGC 896140 Query 33368 AT 33369 || Sbjct 896141 AT 896142 Score = 102 bits (112), Expect = 5e-17 Identities = 168/239 (70%), Gaps = 4/239 (2%) Strand=Plus/Plus Query 33135 AATCTTCA--CCGCCTCTTAACCGCAACACCAAATGCAATGTCGACTCTTTTTGTATATT 33192 ||||| || || ||||| || || | || | ||| | ||||||||||| || || || Sbjct 896134 AATCTGCATTCCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTT 896193 Query 33193 GTAATCAGACAAATTGAGTTGGTCATCCAATTGCTTTCCACTAAATATTAAACGTTGCTG 33252 ||| || ||| | | ||| ||||||||||| ||| || ||||| || || || Sbjct 896194 GTAGTCGCTCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTG 896253 Query 33253 GTCCGTGGGTATGCCTTCTTTTTCGCTAATCGCCTGT-TTTACTGTTTGAATCGTGTCGT 33311 ||| | || || |||||||| || |||| ||| || || | | || ||||| Sbjct 896254 GTCGGGAGGGATACCTTCTTTGTCCTGAATC-TTTGTCTTAACATTCTCGATACTGTCGC 896312 Query 33312 TGGGTTGAACGTCCAGAGTTATCGTTTTTCCCGTAAGAGTTTTTACGAAAATTTGCATG 33370 | |||| ||| || ||||| || |||||||| ||||| || || ||||| || |||||| Sbjct 896313 TTGGTTCAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCATG 896371 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 318768194168058