Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq37 140 3e-28 >seq37 Length=1179958 Score = 140 bits (154), Expect = 3e-28 Identities = 161/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||||| ||| | || ||||| || || | |||||||||||||| || | | Sbjct 895700 CGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTCAGGGTTCGGCCA 895759 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 || || || || |||||| | ||||| | | || || || |||||||||||||||||| Sbjct 895760 TCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGAATACCTTCTTTG 895819 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || |||| ||| ||| | | || |||| | ||||| |||| ||||||| Sbjct 895820 TCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACTTCAAGCGTGATG 895879 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 |||||||| || || ||||| || || |||||||||| Sbjct 895880 GTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCATGC 895916 Score = 120 bits (132), Expect = 3e-22 Identities = 171/237 (72%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||||| || | |||||||| | ||| ||||||||||| | ||| | Sbjct 895451 TTTGCATACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGT 895510 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| || | ||| || || ||||||||| | || || | || ||||||| Sbjct 895511 AGTCGCTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGAT 895570 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 | || || || ||||||||||| | || || | || || ||| | ||| || | Sbjct 895571 CAGGTGGGATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTC-GCTT 895629 Query 94953 GG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCAC-AAAGATCTGCAT 95007 || || || || | |||||||||||||| || || |||||||| ||| |||||||| Sbjct 895630 GGTTCAACTTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 116 bits (128), Expect = 3e-21 Identities = 172/241 (71%), Gaps = 2/241 (1%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| | | || ||| |||||||| || | || | || | || || || || || | | Sbjct 896132 AAAATCTGCATTCCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATG 896191 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || || ||||||| || | || |||| || || || | || ||||||| || Sbjct 896192 TTGTAGTCGCTCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGT 896251 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 || || ||||| |||||||||||||| | ||| |||| ||| || ||| | |||| Sbjct 896252 TGGTCGGGAGGGATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTC- 896310 Query 94949 GCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || ||| || || |||| |||||||||||||| ||||| || ||||| ||||||||||| Sbjct 896311 GCTTGGTTCAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Query 95008 G 95008 | Sbjct 896371 G 896371 Score = 113 bits (124), Expect = 4e-20 Identities = 166/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 94773 TTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTAT 94832 ||| || || ||||||| || | |||||||| | ||| ||||||||||| | ||| | Sbjct 895223 TTTGCATACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGT 895282 Query 94833 AATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGAT 94892 | ||||||| || | ||| || || ||||||||| | || || | || ||||||| Sbjct 895283 AGTCGCTCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGAT 895342 Query 94893 CTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGT 94952 |||| || || || ||||| || | ||| |||| || ||| ||| | ||| | Sbjct 895343 CTGGTGGGATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGG 895402 Query 94953 GGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | || || || | || |||||||||||||| | || || || ||||| ||||| Sbjct 895403 GTTCCACTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 100 bits (110), Expect = 3e-16 Identities = 175/251 (70%), Gaps = 4/251 (2%) Strand=Plus/Plus Query 94760 GGTTTTTTA--AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATT 94817 || |||||| ||| | | || || || | || ||||| || | || | || |||| Sbjct 895893 GGGTTTTTACGAAAATCTGCATGCCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATT 895952 Query 94818 CCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGA 94877 ||||||| | || || ||||||| || | ||| |||| || || ||| | || | Sbjct 895953 CCTTTTGAATATTGTAGTCGCTCAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAA 896012 Query 94878 TTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGC 94937 | || | |||||||| || || || ||||||||||| | ||| |||| ||| ||| Sbjct 896013 TCAACCGCTGCTGATCGGGCGGGATGCCTTCTTTGTCCTGAATCTTTGTCTTCACGTTTT 896072 Query 94938 CGACAGTGTCAGCGTGG-TCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACA 94996 | | | ||| || ||| || || || | |||||||||||||| || || ||||| || Sbjct 896073 CAATGGAGTC-GCTTGGTTCAACTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACG 896131 Query 94997 AAGATCTGCAT 95007 || |||||||| Sbjct 896132 AAAATCTGCAT 896142 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/234 (69%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 94774 TTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATA 94833 |||| ||| || | || |||||||| | || | |||||| |||||||| | ||| || Sbjct 894996 TTACTGTCCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTA 895055 Query 94834 ATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATC 94893 |||||||| || | ||| |||| ||| ||||| | || || | || |||||||| Sbjct 895056 ATCGCTCAAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATC 895115 Query 94894 TGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTG 94953 ||| || || || || ||||| | |||||| | || || ||| | ||| | | Sbjct 895116 TGGTGGGATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGG 895175 Query 94954 GTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || | ||| ||||| || ||||| | || || || ||||| ||||| Sbjct 895176 TTCCACTTCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448277633587560