Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq283 156 5e-33 seq4 86.0 8e-12 >seq283 Length=477172 Score = 156 bits (172), Expect = 5e-33 Identities = 218/302 (72%), Gaps = 4/302 (1%) Strand=Plus/Plus Query 63450 CCGGAGATATAGCTTCCACTGGCACGAATATTAC-TA-ATTGATAGACCTATTCCCCCTG 63507 |||| || ||||||||| ||| ||||| || || ||| | |||| ||||| || | Sbjct 155801 CCGGCTATGTAGCTTCCAGAGGCTCGAATGTTGTGTACATTCA--GACCAATTCCACCAG 155858 Query 63508 CCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCAT 63567 | ||| || ||| ||||||| | | || || ||||| ||||| || |||||||||| Sbjct 155859 CTGATTTGGAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATACCATCAATGCTATCAT 155918 Query 63568 CGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATA 63627 | |||| | || || |||||||| |||| ||| | | ||||| | |||||| | Sbjct 155919 CTGACATGGTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCACGTTCCAGAATTAAACA 155978 Query 63628 AGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTG 63687 ||||| ||||| || || |||||||| || || | || || || |||||||| || | Sbjct 155979 GAGTAGGCGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTATAAGTCTCAATGGCCG 156038 Query 63688 AGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTT 63747 | || || ||||||||||| |||| ||||||||| |||||||| || |||| || Sbjct 156039 CTTTGATGTCATGATGATGAATTCCCACTGAGACACGCATCAACATGTGTTGGGGTCGTT 156098 Query 63748 CA 63749 || Sbjct 156099 CA 156100 Score = 105 bits (116), Expect = 8e-18 Identities = 129/176 (73%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 63273 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63332 |||||||| || ||||| || || || | || ||||| | | |||||| ||||| Sbjct 155176 TGTTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCAT 155235 Query 63333 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63392 ||||||| ||| || || | | ||||| || |||||||||||||| || | |||||| Sbjct 155236 GGTTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTT 155295 Query 63393 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGT 63448 || || ||| ||||| | |||||| || |||| ||| || || | |||||||| Sbjct 155296 GCAGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGT 155351 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62336 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62395 ||| || || || ||||| | ||| | || |||| || ||||| || || ||||| | Sbjct 150737 TACCTGGAACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAA 150796 Query 62396 CGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62455 |||||||||||||| | ||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 150797 GGACTCATTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAG 150856 Query 62456 ACTATTTCT 62464 ||| ||||| Sbjct 150857 ACTGTTTCT 150865 >seq4 Length=2104981 Score = 86.0 bits (94), Expect = 8e-12 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 32997 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTTCC 33056 |||||| || || |||||||| || | || | ||| || || || || ||||| || Sbjct 1669503 AGACATCACACCAGCCTTTTGGTACTCTGCAACTCTTTTCTCAAAGAAGTTTGTTTTCCC 1669444 Query 33057 TTCCAATGATATATTTTCCATGAAATCAAACGGATTGGTAACATTATAAA 33106 ||||||||| || ||||||||||| ||||| ||||| | |||||| |||| Sbjct 1669443 TTCCAATGAGATGTTTTCCATGAAGTCAAATGGATTCGGAACATTGTAAA 1669394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622928348060360