Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq37 138 1e-27 >seq37 Length=1179958 Score = 138 bits (152), Expect = 1e-27 Identities = 170/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | |||||| || |||| ||| | ||||||||| || || |||||||| |||||| Sbjct 896144 CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTC 896203 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||| || | |||||||| ||| | ||||| ||||| ||||| |||||| Sbjct 896204 AAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGG 896263 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 || ||||||||||| ||| | | || ||| | | ||| | | | ||| | | || | Sbjct 896264 ATACCTTCTTTGTC-CTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAAC 896322 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 || | || | |||||| || || || || || ||||| |||||||||| Sbjct 896323 CTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCATGA 896372 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||| ||| | || | ||| || || || || ||||| ||||||||| Sbjct 895688 CCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTC 895747 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || ||||| || ||| |||| | |||||| ||||| ||||| Sbjct 895748 AGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGA 895807 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||||||||| ||| || ||| | | || | || || | | ||||| Sbjct 895808 ATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCTCGACT 895867 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 || | || | |||||| || || || ||||||||||||||||||||| Sbjct 895868 TCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCATG 895915 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||||| ||||| ||| | ||| | || ||||||||||||||||||||||||||| Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || | |||||| |||||| | || | | |||||| || || ||| Sbjct 895063 AAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGG 895122 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 ||||| || ||||| ||||| || | | ||| | | ||| ||| || | Sbjct 895123 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACT 895182 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| ||| || || || | || || ||||| || ||||| Sbjct 895183 TCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || ||||||| |||| ||| | ||||| ||||||||||| ||||| ||||| Sbjct 895915 GCCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCT 895974 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || || || | ||||| || ||| | || || |||||||| || || || Sbjct 895975 CAGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGG 896034 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGA 131185 ||| ||||||||||| ||| | | || ||| | | || | | ||| | | || | Sbjct 896035 GATGCCTTCTTTGTC-CTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAA 896093 Query 131186 TGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | |||||| || || || ||||| |||||||||||||| Sbjct 896094 CTTCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 102 bits (112), Expect = 8e-17 Identities = 160/228 (70%), Gaps = 1/228 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || || || || || || | || || ||||||||||||||||| |||||| Sbjct 895459 CCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTC 895518 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || || || || ||| | || | | |||||| || || ||| Sbjct 895519 AGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGG 895578 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||||||||| ||| ||| || | | ||| | | ||| | | || | Sbjct 895579 ATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACT 895638 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTAC-GAAAATCTGCAT 131234 |||| || | |||||| ||||| || ||||| || ||||||||||| Sbjct 895639 TCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| | || || || || || || | || || ||||||||||||||||| |||||| Sbjct 895231 CCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTC 895290 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || || || || || || || ||| | || | | |||||| || || ||| Sbjct 895291 AGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGG 895350 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTG-CTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||||| ||||| || ||| | | || || | | ||| | | ||| ||| || | Sbjct 895351 ATTCCCTCTTTATC-TTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCAC 895409 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| |||||| || || | || || ||||| || ||||| Sbjct 895410 TTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 471998515712640