Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq37 109 4e-19 >seq37 Length=1179958 Score = 109 bits (120), Expect = 4e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || |||| | || || | ||| || || || |||||||| || ||||||||| | Sbjct 895916 CCGCCACGTAAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTC 895975 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || |||||||| || || || |||| | |||||| || || || Sbjct 895976 AGCGTTCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGG 896035 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||| |||||||| ||| | |||||| | | | | ||||| || || | Sbjct 896036 ATGCCTTCTTTGTCCTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACT 896095 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCATT 16936 |||| |||||||||||||| ||||| |||||||| |||||||||||| Sbjct 896096 TCCAGAGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCATT 896143 Score = 104 bits (114), Expect = 2e-17 Identities = 152/214 (71%), Gaps = 1/214 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| |||||||| |||||||||||| || |||| | | || Sbjct 895474 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895533 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || || |||| |||| ||| || || || | || |||||||| Sbjct 895534 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTGGGATTCCTTCTTTGTCT 895593 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 || | | ||||| | | | | ||||| || || ||| | ||||||||| Sbjct 895594 TGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAACTTCGAGAGTGATGGTT 895653 Query 16904 TTTCCGGTCAGCGTTTTGAC-AAAAATCTGCATT 16936 ||||||||||| ||||| || ||||||||||||| Sbjct 895654 TTTCCGGTCAGGGTTTTCACAAAAAATCTGCATT 895687 Score = 102 bits (112), Expect = 7e-17 Identities = 152/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || |||| || || ||||| |||||||| |||||||||||| || |||| | | || Sbjct 895246 AGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGCTCAGGGTTCGGCCATCT 895305 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 || | |||||| || || |||| |||| ||| || || || | |||||||| || Sbjct 895306 TCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTGGGATTCCCTCTTTATCT 895365 Query 16844 GCAA--TTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGG 16901 || |||| | ||||| | | | | ||||| ||| ||| ||||| ||| |||| Sbjct 895366 TGAATCTTTGTT--TTCACGTTCTCGATGGAGTCGCTGGGTTCCACTTCCAGGGTAATGG 895423 Query 16902 TTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||||| |||| || ||||| || || ||||| Sbjct 895424 TTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 16724 AGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCGTCC 16783 || || | ||| || || ||||| || || |||||||||||| || ||| | |||| Sbjct 896159 AGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGTCGCTCAAGGTACGGCCGTCT 896218 Query 16784 TCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTGTCG 16843 |||||||| ||||| || |||| | ||||||||||| ||| | || |||||||| Sbjct 896219 TCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGGGAGGGATACCTTCTTTGTCC 896278 Query 16844 GCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATGGTT 16903 ||| | ||| || | | | | |||||| || || || | ||||||||| Sbjct 896279 TGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTTCAACCTCAAGAGTGATGGTT 896338 Query 16904 TTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| || ||||| || || || |||||||| Sbjct 896339 TTTCCTGTAAGCGTCTTCACGAAGATCTGCAT 896370 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || |||| || || ||||| || || || ||||| || ||| | Sbjct 895688 CCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAATCGCTC 895747 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | |||| | | || || | ||| || || || | || || ||||||||||| ||| Sbjct 895748 AGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGGGAGGA 895807 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | || |||||||| || |||| |||||| | | | || ||| | ||||| Sbjct 895808 ATACCTTCTTTGTCTTGGATCTTTG--TCTTCACGTTTTCAATAGAGTCACTCGGCTCGA 895865 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | |||||||||||||| ||||| ||||| || ||||||||||| Sbjct 895866 CTTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCAT 895914 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | || || | ||| || || ||||||||||| |||||||| ||| | Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | | || ||||| || || || || ||||||||| ||| || || || Sbjct 895063 AAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGG 895122 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | ||||| ||||| ||||| ||||| | | | | ||||| ||| ||| | Sbjct 895123 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACT 895182 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| || ||||| || || |||| || ||||| || || ||||| Sbjct 895183 TCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405076047498790