Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq37 120 2e-22 seq706 118 7e-22 seq270 118 7e-22 seq158 118 7e-22 seq404 116 2e-21 seq610 109 4e-19 seq149 104 2e-17 seq110 93.3 3e-14 seq372 91.5 1e-13 seq752 86.0 4e-12 seq671 84.2 1e-11 >seq37 Length=1179958 Score = 120 bits (132), Expect = 2e-22 Identities = 160/222 (72%), Gaps = 8/222 (4%) Strand=Plus/Plus Query 38100 AAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGT 38159 |||||||| || | |||||| || ||||||||||||||||| || || ||| Sbjct 895925 AAACGCAAAACTAGATGAAGTGTCGATTCCTTTTGAATATTGTAGTCGCTCAG----CGT 895980 Query 38160 TCG----TCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCC 38215 ||| || || ||||| || ||||| || || | || || ||||||| |||| ||| Sbjct 895981 TCGGCCATCTTCCAATTGCTTCCCGGCGAAAATCAACCGCTGCTGATCGGGCGGGATGCC 896040 Query 38216 TTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAA 38275 |||||||||| ||| ||| |||||| || | | | || | ||||||||| | Sbjct 896041 TTCTTTGTCCTGAATCTTTGTCTTCACGTTTTCAATGGAGTCGCTTGGTTCAACTTCCAG 896100 Query 38276 TGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || || ||||| ||||||| |||||| ||||| |||||||| Sbjct 896101 AGTGATGGTTTTTCCCGTCAGGGTTTTGACGAAAATCTGCAT 896142 Score = 120 bits (132), Expect = 2e-22 Identities = 167/233 (72%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| |||||||||||||| | || | |||||| || ||| || || || ||||| | Sbjct 896140 CATT-CCACCTCTCAAACGAAGGACTAGATGAAGGGTCGACTCTTTCTGGATGTTGTAGT 896198 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | ||| ||| |||| || ||||| || || || || |||| || ||||| |||| Sbjct 896199 CGCTCAAGGTACGGCCGTCTTCCAATTGCTTGCCAGCGAAAATTAATCGCTGTTGGTCGG 896258 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 |||| |||||||||||| ||| ||| ||| ||||||| || | | || | || Sbjct 896259 GAGGGATACCTTCTTTGTCCTGAATCTTTGTCTTAACATTCTCGATACTGTCGCTTGGTT 896318 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 |||| || | || || ||||| || || | || |||||||| ||||||||| Sbjct 896319 CAACCTCAAGAGTGATGGTTTTTCCTGTAAGCGTCTTCACGAAGATCTGCATG 896371 Score = 113 bits (124), Expect = 3e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||||||||| | ||||||||| |||||||||||| |||||||| | Sbjct 895003 CCACCGCGCAGACGCAACACAAGATGAAGAGTAGACTCCTTTTGAATGTTGTAATCGCTC 895062 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 || ||| | || || || || ||||| || || || || | || ||||| | ||| Sbjct 895063 AAGGTACGGCCATCTTCCAACTGCTTTCCTGCGAAAATAAGCCTCTGCTGATCTGGTGGG 895122 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | || || ||||| |||||| |||||||||| || | || | ||| ||| Sbjct 895123 ATTCCCTCCTTGTCTTGAATTTTGGTTTTCACATTCTCGATGGAGTCGCTGGGTTCCACT 895182 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || | ||||| || || || |||||||| || ||||| || ||||| Sbjct 895183 TCCAGCGTAATGGTCTTCCCAGTCAAGGTCTTGACGAAGATTTGCAT 895229 Score = 109 bits (120), Expect = 4e-19 Identities = 163/230 (71%), Gaps = 1/230 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| || | ||||| ||||||||| ||||||||||| ||||| || Sbjct 895457 TACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGC 895516 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | |||||||||||| || || || | || ||||| | | Sbjct 895517 TCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCAGGTG 895576 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| ||||||||||| || || |||||||||| || | || | ||||| Sbjct 895577 GGATTCCTTCTTTGTCTTGGATCTTCGTTTTCACATTCTCGATGGAGTCGCTTGGTTCAA 895636 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC-GAATATCTGCAT 38317 |||| | || || ||||| || |||| ||||||||| || |||||||| Sbjct 895637 CTTCGAGAGTGATGGTTTTTCCGGTCAGGGTTTTCACAAAAAATCTGCAT 895686 Score = 102 bits (112), Expect = 5e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 38089 TACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAG 38148 |||||||||||| || | ||||| ||||||||| ||||||||||| ||||| || Sbjct 895229 TACCACCTCTCAGGCGAAGAACCAAGTGAAGAGTGGATTCCTTTTGAATGTTGTAGTCGC 895288 Query 38149 ACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGG 38208 || || | || || | |||||||||||| || || || | || ||||| | | Sbjct 895289 TCAGGGTTCGGCCATCTTCGAGTTGTTTTCCGGCGAAAATCAGCCTCTGCTGATCTGGTG 895348 Query 38209 GGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAA 38268 ||| || ||||| || ||| ||| ||||| |||| || | || | ||| | Sbjct 895349 GGATTCCCTCTTTATCTTGAATCTTTGTTTTCACGTTCTCGATGGAGTCGCTGGGTTCCA 895408 Query 38269 CTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 |||| | ||||| ||||| || ||||| || || ||||| || ||||| Sbjct 895409 CTTCCAGGGTAATGGTTTTTCCAGTCAATGTCTTGACGAAGATTTGCAT 895457 Score = 87.8 bits (96), Expect = 1e-12 Identities = 160/233 (69%), Gaps = 1/233 (0%) Strand=Plus/Plus Query 38086 CATTACCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAAT 38145 |||| ||||| | | ||||||||||| ||||| ||| || || || || || |||| Sbjct 895684 CATT-CCACCACGAAGACGCAACACCAGGTGAAGGGTGGATTCTTTCTGGATGTTATAAT 895742 Query 38146 CAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGG 38205 | || || | || || | ||| |||||||| || || || || ||||| |||| Sbjct 895743 CGCTCAGGGTTCGGCCATCTTCGAGTTGCTTTCCGGCGAAGATGAGACGCTGTTGGTCGG 895802 Query 38206 AGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTT 38265 || | ||||||||||| || ||| |||||| || | | || || | | Sbjct 895803 GAGGAATACCTTCTTTGTCTTGGATCTTTGTCTTCACGTTTTCAATAGAGTCACTCGGCT 895862 Query 38266 CAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 | ||||| | || || ||||| || |||| |||||| ||||| ||||||||| Sbjct 895863 CGACTTCAAGCGTGATGGTTTTTCCTGTCAGGGTTTTTACGAAAATCTGCATG 895915 >seq706 Length=204824 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||| |||||| || |||||||| Sbjct 2583 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTGAATAGGGACAGTGGGAATCTCGT 2524 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 2523 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 2489 >seq270 Length=486493 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||| |||||| || |||||||| Sbjct 245427 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTGAATAGGGACAGTGGGAATCTCGT 245486 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 245487 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 245521 >seq158 Length=676796 Score = 118 bits (130), Expect = 7e-22 Identities = 83/95 (87%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| ||||||||||||||| |||||||||||||||| |||||| || |||||||| Sbjct 656565 AAGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTGAATAGGGACAGTGGGAATCTCGT 656506 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||||||||||||||||||||||||| Sbjct 656505 TCATCCATTCATGCGCGTCACTAATTAGATGACGA 656471 Score = 100 bits (110), Expect = 2e-16 Identities = 67/75 (89%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 19948 TCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCG 20007 ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 675622 TCTCTTTTCAAAGTTCTTTTCAACTTTCCCTCATGGTACTTGTTCGCTATCGGTCTCGCA 675563 Query 20008 GTAATATTTAGCCTT 20022 | ||| |||||| Sbjct 675562 CCAGTATCGAGCCTT 675548 Score = 96.9 bits (106), Expect = 2e-15 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||||||||||| ||||||||| |||||||||||||||||||||||||| Sbjct 664902 CTCTCTTTTCAAAGTTCTTTTCATCTTTCCCTCGCGGTACTTGTTCGCTATCGGTCTCGC 664843 Query 20007 G 20007 | Sbjct 664842 G 664842 >seq404 Length=367653 Score = 116 bits (128), Expect = 2e-21 Identities = 82/94 (87%), Gaps = 5/94 (5%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTT 25957 || ||||||||||||||| |||||||||||||||| |||||| || ||||||||| Sbjct 43481 AGTCCGTTCCCTTGGCTGCGGTTTCGCTAGATAGTGAATAGGGACAGTGGGAATCTCGTT 43540 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| |||||||||||||||||||||||||||| Sbjct 43541 CATCCATTCATGCGCGTCACTAATTAGATGACGA 43574 >seq610 Length=240994 Score = 109 bits (120), Expect = 4e-19 Identities = 81/95 (85%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || |||||||||||| |||||||||||||||| |||||| || |||||||| Sbjct 109656 AAGTCCATTCCCTTGGCTGCGGTTTCGCTAGATAGTGAATAGGGACAGTGGGAATCTCGT 109597 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| |||||| ||||||||||||||||||||| Sbjct 109596 TCATCCATTCATGTGCGTCACTAATTAGATGACGA 109562 >seq149 Length=699854 Score = 104 bits (114), Expect = 2e-17 Identities = 80/95 (84%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| |||||||||||||||||||||||||| ||||| |||||| || || ||||| Sbjct 222702 AAGTCCGTTCCCTTGGCTGTGGTTTCGCTACATAGTGAATAGGGACAGTGGGAAGCTCGT 222643 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 | |||| ||||||| ||||||||||||||| |||| Sbjct 222642 TCATCCATTCATGCTCGTCACTAATTAGATAACGA 222608 >seq110 Length=787233 Score = 93.3 bits (102), Expect = 3e-14 Identities = 119/164 (73%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 6321 CCGACGAAATATTTCGGGTGCGAACTTGGCGCTCAGACGCAGTTTGATCACAAAAACGAG 6380 || || ||||| || || || ||| | || || ||||| ||| ||||| ||||| || Sbjct 618959 CCAACCAAATACTTTGGCTGTGAATTAGGTGCACAGACACAGATTGATTTGAAAAATGAA 619018 Query 6381 CGCTTCATCGTTAACGGATCGCATAACTCTGCCAAGCTGCAGGACTTACTTGACGGCTTT 6440 || | ||| ||||||||||| ||| | | | |||||||| || |||||||||| || Sbjct 619019 CGTTACATTGTTAACGGATCACATGATGCAGAAAAGCTGCAAGAAATACTTGACGGTTTC 619078 Query 6441 ATTCGCAAGTTTGTGCTGTGTCGGGAATGCGATAACCCGGAGAC 6484 ||| |||||||| |||||| || || || || || || || Sbjct 619079 ATTGAGAAGTTTGTTTTGTGTCCAGATTGTGAAAATCCTGAAAC 619122 >seq372 Length=389042 Score = 91.5 bits (100), Expect = 1e-13 Identities = 77/95 (81%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || |||||||| ||| ||||| |||||||||| |||||| |||||||| || Sbjct 167987 AAGGCCATTCCCTTGACTGCGGTTTGGCTAGATAGTGAATAGGGACAGAGGTAATCTTGT 167928 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||||||| |||||||||||||| ||| Sbjct 167927 GCATCCATTCATGCGCCTCACTAATTAGATGGCGA 167893 >seq752 Length=183930 Score = 86.0 bits (94), Expect = 4e-12 Identities = 76/95 (80%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||| || |||||||| ||| ||||| |||||||||| || ||| ||||||||||| Sbjct 31811 AAGGCCATTCCCTTGACTGCGGTTTGGCTAGATAGTGAATCGGGACAGAGGTAATCTCGT 31870 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||| ||||||||| |||||||||||| | ||| Sbjct 31871 GCATCCATTCATGCGCCTCACTAATTAGACGGCGA 31905 >seq671 Length=218750 Score = 84.2 bits (92), Expect = 1e-11 Identities = 61/71 (86%), Gaps = 5/71 (7%) Strand=Plus/Minus Query 25924 TTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGTTAATCCTTTCATGCGCGTCACT 25978 |||||||||||||| |||||| || ||||||||| |||| ||||||||||||||| Sbjct 23510 TTTCGCTAGATAGTGAATAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTCACT 23451 Query 25979 AATTAGATGAC 25989 ||||||||||| Sbjct 23450 AATTAGATGAC 23440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334937317068851