Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq283 150 2e-31 seq4 82.4 1e-10 >seq283 Length=477172 Score = 150 bits (166), Expect = 2e-31 Identities = 213/296 (72%), Gaps = 4/296 (1%) Strand=Plus/Plus Query 63311 ATATAGCTTCCACTGGCACGAATATTAC-TA-ATTGATAGACCTATTCCCCCTGCCATTT 63368 || ||||||||| ||| ||||| || || ||| | |||| ||||| || || || Sbjct 155807 ATGTAGCTTCCAGAGGCTCGAATGTTGTGTACATTCA--GACCAATTCCACCAGCTGATT 155864 Query 63369 TAGAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCA 63428 | || ||| ||||||| | | || || ||||| || || || || |||||||| || Sbjct 155865 TGGAAATTTTTGCGCATGTTGTCAAGGTTTCATAAATACCATCAATGCTATCATCTGACA 155924 Query 63429 TGTTAAGTAGAAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAG 63488 || | || || |||||||| |||| ||| | | ||||| | |||||| | |||| Sbjct 155925 TGGTCAGAAGGAAACAGCTTGACAATTGCGGTTTGCACGTTCCAGAATTAAACAGAGTAG 155984 Query 63489 GAGAAGCGTGAGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAATAGCTGAGTCTA 63548 | ||||| ||||| |||||||| || || | || || || |||||||| || | | | Sbjct 155985 GCGAAGCATGAGTGAACCATTTCTCTGACATCAGGTTATAAGTCTCAATGGCCGCTTTGA 156044 Query 63549 TATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCA 63604 | || ||||||||||| |||| ||||||||| |||||||| || |||| |||| Sbjct 156045 TGTCATGATGATGAATTCCCACTGAGACACGCATCAACATGTGTTGGGGTCGTTCA 156100 Score = 116 bits (128), Expect = 5e-21 Identities = 132/177 (75%), Gaps = 0/177 (0%) Strand=Plus/Plus Query 63128 TGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCAC 63187 |||||||| || ||||| || || || | || ||||| | | |||||| ||||| Sbjct 155176 TGTTCCTCTTTGCCTGTGTTTTTCTTCAAGTCCAGGAAATCAAAGATATCACTGTGCCAT 155235 Query 63188 GGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTA 63247 ||||||| ||| || || | | ||||| || |||||||||||||| || | |||||| Sbjct 155236 GGTTCCAGGTAAATAGCAAATGCACCAGGTCGCTTGTTTCCTCCCTGGTCCACGTATCTT 155295 Query 63248 GCGGTGTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTC 63304 || || ||| ||||| | |||||| || |||| |||||| || || ||||||||| Sbjct 155296 GCAGTTGCATTGTAAACACGCAACATGGGGATAAGACCATTCGAAGTTCCATTGGTC 155352 Score = 93.3 bits (102), Expect = 5e-14 Identities = 98/129 (76%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 62191 TACTTGAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCAC 62250 ||| || || || ||||| | ||| | || |||| || ||||| || || ||||| | Sbjct 150737 TACCTGGAACTCGCCAGAAAGTACACGCCTGCTGTAGATGTTACTTGTGTAAGGTTCAAA 150796 Query 62251 AGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAA 62310 |||||||||||||| | ||| || ||||| ||||| || ||||| ||||| ||||| | Sbjct 150797 GGACTCATTATTTCCAAGAATCTGTGCAGTGGATGCTGTTGGCATTGGTGCAACCAACAG 150856 Query 62311 ACTATTTCT 62319 ||| ||||| Sbjct 150857 ACTGTTTCT 150865 >seq4 Length=2104981 Score = 82.4 bits (90), Expect = 1e-10 Identities = 84/110 (76%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 32354 AGACATAACTCCCATTTTTTGGTATTCACCCACACGTTTTTCGAAAAAATTAGTTTTACC 32413 |||||| || || |||||||| || | || | ||| || || || || ||||| || Sbjct 1669503 AGACATCACACCAGCCTTTTGGTACTCTGCAACTCTTTTCTCAAAGAAGTTTGTTTTCCC 1669444 Query 32414 TTCTAATGATATATTTTCCATGAAATCGAATGGATTGGTAACATTATAAA 32463 ||| ||||| || ||||||||||| || |||||||| | |||||| |||| Sbjct 1669443 TTCCAATGAGATGTTTTCCATGAAGTCAAATGGATTCGGAACATTGTAAA 1669394 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633612824711600