Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acropora_20digitifera_20[refseq_20GCF_5F000222465.1_202016-01-15] 2,421 sequences; 447,497,157 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq37 131 1e-25 >seq37 Length=1179958 Score = 131 bits (144), Expect = 1e-25 Identities = 167/229 (73%), Gaps = 1/229 (0%) Strand=Plus/Minus Query 24998 AATGCAAATATTT-GTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGT 25056 |||||| || ||| || || || ||||||| ||| ||||||| ||||||| || | Sbjct 895687 AATGCAGATTTTTTGTGAAAACCCTGACCGGAAAAACCATCACTCTCGAAGTTGAACCAA 895628 Query 25057 CTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | |||||| |||| || ||| ||||||||||| || |||||||| | Sbjct 895627 GCGACTCCATCGAGAATGTGAAAACGAAGATCCAAGACAAAGAAGGAATCCCACCTGATC 895568 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || | ||||| ||||| |||||| | ||||||| || || || |||| |||| Sbjct 895567 AGCAGAGGCTGATTTTCGCCGGAAAACAACTCGAAGATGGCCGAACCCTGAGCGACTACA 895508 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGG 25225 | |||||||| |||||||| || || || || || | || ||||| || Sbjct 895507 ACATTCAAAAGGAATCCACTCTTCACTTGGTTCTTCGCCTGAGAGGTGG 895459 Score = 127 bits (140), Expect = 2e-24 Identities = 150/203 (74%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || ||||| || |||| || ||| ||||||| | ||||| ||| || | Sbjct 895914 ATGCAGATTTTCGTAAAAACCCTGACAGGAAAAACCATCACGCTTGAAGTCGAGCCGAGT 895855 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||| |||| || ||||| ||| ||| ||||||||||| ||||| || |||||| Sbjct 895854 GACTCTATTGAAAACGTGAAGACAAAGATCCAAGACAAAGAAGGTATTCCTCCCGACCAA 895795 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || || ||||| || ||| | ||||||| || || || ||||||| || Sbjct 895794 CAGCGTCTCATCTTCGCCGGAAAGCAACTCGAAGATGGCCGAACCCTGAGCGATTATAAC 895735 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || ||||||||||| || || Sbjct 895734 ATCCAGAAAGAATCCACCCTTCA 895712 Score = 116 bits (128), Expect = 3e-21 Identities = 154/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || || || || || |||| || ||| ||||||| | ||||| || | Sbjct 896143 AATGCAGATTTTCGTCAAAACCCTGACGGGAAAAACCATCACTCTGGAAGTTGAACCAAG 896084 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 ||| | || || ||||| |||| | ||| ||||||||||| || || || || | Sbjct 896083 CGACTCCATTGAAAACGTGAAGACAAAGATTCAG-GACAAAGAAGGCATCCCGCCCGATC 896025 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | |||||| | ||||| ||||| || ||||| ||||||| || || || |||| |||| Sbjct 896024 AGCAGCGGTTGATTTTCGCCGGGAAGCAATTGGAAGATGGCCGAACGCTGAGCGACTACA 895965 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGT 25207 |||||||||| ||||| || || ||| |||| Sbjct 895964 ATATTCAAAAGGAATCGACACTTCATCTAGT 895934 Score = 111 bits (122), Expect = 1e-19 Identities = 164/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || || ||| ||||||| | || || || | Sbjct 896370 ATGCAGATCTTCGTGAAGACGCTTACAGGAAAAACCATCACTCTTGAGGTTGAACCAAGC 896311 Query 25059 GACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCA 25117 |||| ||||||| | ||| |||| | ||| ||||||||||| || || || ||||| Sbjct 896310 GACAGTATCGAGAATGTTAAGACAAAGATTCAG-GACAAAGAAGGTATCCCTCCCGACCA 896252 Query 25118 ACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAA 25177 |||||| | ||||| || ||||| ||||| ||||| | || || || |||| ||||| Sbjct 896251 ACAGCGATTAATTTTCGCTGGCAAGCAATTGGAAGACGGCCGTACCTTGAGCGACTACAA 896192 Query 25178 TATTCAAAAAGAATCCACGCTACATTTAGTGCTAAGGCTAAGAGGAGGAA 25227 || || ||||| || || || ||| |||| || | | ||||| |||| Sbjct 896191 CATCCAGAAAGAGTCGACCCTTCATCTAGTCCTTCGTTTGAGAGGTGGAA 896142 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433315214251115